Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_028878.1 Length=76271 Score E Sequences producing significant alignments: (Bits) Value seq54491 84.2 1e-11 seq27440 84.2 1e-11 >seq54491 Length=272697 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 66126 GGTGCCCCCACAAGGGATCGAACCTTGGACCCGATGATTAAAAGTCACCTGCTCTACCAA 66185 |||| | ||| |||| |||||||| ||||||| ||||||| ||||| |||||||||||| Sbjct 139438 GGTGGGCGCACCAGGGCTCGAACCTGGGACCCGCTGATTAAGAGTCAGCTGCTCTACCAA 139497 Query 66186 CTGAGCTAT 66194 ||||||||| Sbjct 139498 CTGAGCTAT 139506 >seq27440 Length=426762 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 66126 GGTGCCCCCACAAGGGATCGAACCTTGGACCCGATGATTAAAAGTCACCTGCTCTACCAA 66185 |||| | ||| |||| |||||||| ||||||| ||||||| ||||| |||||||||||| Sbjct 386816 GGTGGGCGCACCAGGGCTCGAACCTGGGACCCGCTGATTAAGAGTCAGCTGCTCTACCAA 386757 Query 66186 CTGAGCTAT 66194 ||||||||| Sbjct 386756 CTGAGCTAT 386748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243773703310384