Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_028879.1 Length=43225 Score E Sequences producing significant alignments: (Bits) Value seq41949 87.8 5e-13 seq24081 86.0 2e-12 >seq41949 Length=34521 Score = 87.8 bits (96), Expect = 5e-13 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 31253 TTGGCTGCGCCGGTAGGATTCGAACCTACGAATGCCGGAATCAAAATCCGGTGCCTTACC 31312 ||||||| | ||| ||||||||||||| || ||| ||||||||||||| ||||||||| Sbjct 15329 TTGGCTGGGGCGGGAGGATTCGAACCTCCGCATGGGGGAATCAAAATCCCCTGCCTTACC 15270 Query 31313 GCTTGGCGACGGCGCAAAAGC 31333 |||||||||| | ||| ||| Sbjct 15269 ACTTGGCGACGCCCCAATAGC 15249 >seq24081 Length=154825 Score = 86.0 bits (94), Expect = 2e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 31254 TGGCTGCGCCGGTAGGATTCGAACCTACGAATGCCGGAATCAAAATCCGGTGCCTTACCG 31313 |||||| | ||| ||| |||||||| |||||| ||||||||||||||| |||||||||| Sbjct 73005 TGGCTGGGGCGGGAGGGATCGAACCTCCGAATGGCGGAATCAAAATCCGCTGCCTTACCG 73064 Query 31314 CTTGGCGACG 31323 |||||| ||| Sbjct 73065 CTTGGCTACG 73074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138105280363348