Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq32030 145 2e-30 seq34751 131 5e-26 >seq32030 Length=166927 Score = 145 bits (160), Expect = 2e-30 Identities = 259/372 (70%), Gaps = 12/372 (3%) Strand=Plus/Minus Query 38916 CTTGGTCAGCTTCTCGCCGACCTGGA---AGGGCTTGTCCAGCACGCGGGCCGCGTCCTT 38972 ||| || ||||| ||| |||||| ||||| | | || |||||| | |||| Sbjct 86194 CTTCGTGAGCTTGTCG---ACCTGGCCATAGGGCATCTGGAGGACGCGGCCGACGTCGCG 86138 Query 38973 CATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTGTGCGACCTTGTCACTGCC 39032 || | | |||||||| | | ||| | || |||||| ||||||| ||| | ||| Sbjct 86137 CAGCACCCCGCGCGCCTGCAGCGTACCGAAGGTGATGATCTGCGCGACCTGGTCGCGGCC 86078 Query 39033 GTACTTCTCGGTG-ACGTACCGGATCACGTCGCCACGGCGA--CGGTCATCGAAGTCGAT 39089 ||| || | || ||||| | |||||| ||||| |||||| | | || ||| ||||| Sbjct 86077 GTAGCGCT-GCTGCACGTAACTGATCACCTCGCCGCGGCGATCCTGGCA--GAAATCGAT 86021 Query 39090 GTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTG 39149 ||| | ||| ||||| ||||| || || || || ||||| |||||||| | || ||| Sbjct 86020 GTCGAAGTCCGGCATCGAGACGCGTTCGGGATTGAGGAAGCGCTCGAACAGCAGGCCGAA 85961 Query 39150 AGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGA 39209 ||| || || ||||||||||| || || ||||| |||||||||| || | || Sbjct 85960 CTTGATCGGATCGAGGTCGGTGATGGTCAGCGCCCACGCGACCAGCGAGCCGGCGCCGGA 85901 Query 39210 GCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGAC 39269 |||||| || || ||||| | ||| | ||| ||||| ||||||||||| || Sbjct 85900 GCCGCGGCCCGGCCCGACGGGAATGCCTTGGCTCTTTGCCCATTTGATGAAGTCGGACAC 85841 Query 39270 GACGAGGAAGTA 39281 || |||||||| Sbjct 85840 GATCAGGAAGTA 85829 Score = 96.9 bits (106), Expect = 1e-15 Identities = 225/333 (68%), Gaps = 6/333 (2%) Strand=Plus/Minus Query 37930 GCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGT 37989 ||||| ||| |||| |||| || |||| ||||| ||| || ||| | |||| | || Sbjct 87135 GCCGCGATGAACTCCACCGGATAATGCGCCTTCATGTAGGCGGTGTGATAGGACACCAGC 87076 Query 37990 CCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCC 38049 | || || || | ||| |||||||||| |||| ||||||| | |||| || Sbjct 87075 GCATAGGCGGCCGCGTGGCTCTTGTTGAAGCCGTAGTCGGCGAACTTGGCCAGCAATTCG 87016 Query 38050 CACACCGCC-CGGATGGCAGCCTCCGAGTAGCCTCGCTCGCT--CGCCCCCTTCTGGAAG 38106 | | | | ||| || ||| || | | || || || ||| ||| |||| Sbjct 87015 AAGATGGTCTCGGCCTGCC-CCTTCG-GCACCC-CGTTCTTCACCGCACCCGCGACGAAG 86959 Query 38107 TTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGG 38166 | || || |||| ||| | | || | ||||||||||||||||||| || || ||| Sbjct 86958 ATATCGCGCTGCTTGTCCATCTCGGCGCGGATCTTCTTGCCCATGGCGCGGCGCAGAAGG 86899 Query 38167 TCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGG 38226 ||||| | ||||| | || || | || | |||||| || | |||||| |||||| Sbjct 86898 TCGGCGTCGCCGAGCGAATAGCCCGACATCACCTGCGCGATCTGCATCACCTGTTCCTGG 86839 Query 38227 TAGATGATGAGCCCGAAGGTCGGGTCCAGGATC 38259 |||||||||| ||||||||| | ||||||| Sbjct 86838 TAGATGATGACGCCGAAGGTCTCTTTCAGGATC 86806 >seq34751 Length=230815 Score = 131 bits (144), Expect = 5e-26 Identities = 233/339 (69%), Gaps = 6/339 (2%) Strand=Plus/Plus Query 38983 CGCGCCTTGATCCGTCCGTACGTCGCGATCTGTGCGACCTTGTCACTGCCGTACTTCTCG 39042 ||||||| | | |||| | || |||||| |||||| || | |||||| ||| Sbjct 178842 CGCGCCTGCAACGTTCCGAAGGTGATGATCTGGCCGACCTGATCGCGGCCGTAGCGCTCC 178901 Query 39043 GTGACGTACCGGATCACGTCGCCACGGCGACGGTCATC---GAAGTCGATGTCCACGTCG 39099 ||||| |||||||| ||||| ||| ||||| | |||||||||||| | ||| Sbjct 178902 TGCACGTAGCGGATCACCTCGCC---GCGCCGGTCCTGACAGAAGTCGATGTCGAAGTCC 178958 Query 39100 GGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGG 39159 ||||| ||||| || || || || ||||| |||||||| | || ||| |||| || Sbjct 178959 GGCATCGAGACGCGTTCCGGATTGAGGAAGCGCTCGAACAGCAGACCGAACCGGATCGGA 179018 Query 39160 TCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCA 39219 || |||||||| || | ||||| || |||||||||| || | || ||||| || Sbjct 179019 TCGAGGTCGGTAATGGTCAATGCGTAAGCCACCAGCGAGCCTGCGCCCGAACCGCGGCCC 179078 Query 39220 GGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAG 39279 || |||||| | ||| | |||||| ||||||||| | ||||| |||||| Sbjct 179079 GGCCCGACCGGAATGCCCTCGGACTTCGCATGCTTGATGAAGTCCGAGACGATCAGGAAG 179138 Query 39280 TACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCG 39318 || || | |||| || |||| | ||||||||| Sbjct 179139 TATCCCGAATAGTTCATCCGGGTGATGACATCGATCTCG 179177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159607582101444