Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value seq54303 313 1e-80 seq55957 297 9e-76 >seq54303 Length=793959 Score = 313 bits (346), Expect = 1e-80 Identities = 533/761 (70%), Gaps = 15/761 (2%) Strand=Plus/Plus Query 66471 CCACCGGCTCTATCGCTCTGGACGGCGCCCTGGGCATCGGGGGG-TACCCGAGGGGCCGG 66529 || ||||||| ||| || || ||| || |||||||| || | ||| |||||| | Sbjct 1494 CCTCCGGCTCCCTCGGGCTTGATATCGCGCTCGGCATCGGCGGCCTGCCCAAGGGGC-GT 1552 Query 66530 GTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTG 66589 || || || |||||||| || ||||| || || ||| | || ||| || || ||||| Sbjct 1553 GTCGTCGAGATCTACGGGCCGGAATCGTCGGGCAAGACGACGCTGGCGCTGCATACGGTG 1612 Query 66590 GCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGAC 66649 || | ||||||||| || |||| ||||| |||||||| |||||| | || ||| Sbjct 1613 GCGGAGGCGCAGAAGAAGGGCGGCATTTGCGCCTTTATCGACGCCGAGCACGCGCTCGAC 1672 Query 66650 CCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCCGAT 66709 || | || ||| ||| || || || ||||| | || || | |||||||| Sbjct 1673 CCGGTCTATGCCCGCAAGCTGGGCGTCAACATCGACGAGCTGCTGATCTCGCAGCCCGAC 1732 Query 66710 ACCGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTC--CA 66767 |||||||||||||| ||||||||| ||| | | || || | | || ||| | Sbjct 1733 ACCGGCGAGCAGGCGCTGGAGATCTGCGACACCTTGGTGCGCTCCG--GTGCCGTCGACG 1790 Query 66768 TCGTCGTCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCG 66827 | |||| || || || || ||||| ||||||||| ||||||||||| ||||| || | Sbjct 1791 TTCTCGTGGTCGATTCGGTCGCGGCGCTGGTGCCGAAGGCCGAGCTCGAGGGCGAGATGG 1850 Query 66828 GGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCGCAAGCTCACTG 66887 | ||| | |||||||| || ||| | ||| ||||| | ||||||||||| | Sbjct 1851 GCGACGCGCTGCCGGGCCTGCAGGCCCGCTTGATGAGCCAGGCGCTACGCAAGCTCACGG 1910 Query 66888 GCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCG 66947 | ||||| || |||||||| || | ||| |||||||| | ||| |||||||| Sbjct 1911 CCTCCATCAACAAGTCCAACACGATGGTGATCTTCATCAACCAGATCCGCATGAAGATCG 1970 Query 66948 GCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGGTTCTACG 67007 | |||| |||||| || ||| || ||||| ||||| || || ||| ||||||| Sbjct 1971 G---CGTGATGTACGGCTCGCCTGAAACGACCACCGGCGGCAATGCGCTGAAATTCTACG 2027 Query 67008 CCTCAGTCCGTATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCG 67067 |||||||||| | || |||| ||||||| | | ||||| | || |||| |||| Sbjct 2028 CCTCAGTCCGCCTCGACATCCGCCGCATCGGCGCGATCAAGGAGCGTGACGAGGTGGTCG 2087 Query 67068 GCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCAC-CGCA-ATGC 67125 ||||| ||| || || ||||| || |||||||||||||| ||||| | ||| || Sbjct 2088 GCAACACCACGCGCGTCAAGGTGGTGAAGAACAAGCTGGCGCCGCCCTTCAAGCAGAT-- 2145 Query 67126 CGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGA-GGTCGAACTCCTCGACCTGG 67184 ||||||| | || ||||||| |||||| |||| | || || || ||||||| || | Sbjct 2146 CGAGTTCGACATCATGTACGGCGAGGGCGTCTC-CAAGATGGGTGAGATCCTCGATCTCG 2204 Query 67185 CCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTC 67225 ||| | ||| | || ||||||| |||||||||||| Sbjct 2205 GCGTCAAGGCCGGCATCGTCGAGAAGTCCGGCGCCTGGTTC 2245 >seq55957 Length=247269 Score = 297 bits (328), Expect = 9e-76 Identities = 526/762 (69%), Gaps = 9/762 (1%) Strand=Plus/Plus Query 66467 ATTCCCACCGGCTCTATCGCTCTGGACGGCGCCCTGGGCATCGGGGGGTACCCGAGGGGC 66526 ||| || | ||||| | | |||||| ||| ||||||||||| || | || | ||| Sbjct 173989 ATTTCCTCGGGCTCGCTGGGGCTGGACATCGCGCTGGGCATCGGTGGCTTGCCCAAGGGG 174048 Query 66527 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 66586 |||||| | || || ||||| || ||||| || || ||| |||| ||| || ||| Sbjct 174049 CGGGTGATCGAGATTTACGGGCCGGAATCCTCCGGCAAGACAACGCTGGCGCTGCACTGC 174108 Query 66587 GTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTG 66646 ||||| | || |||||| || |||| | ||||| |||||| || || ||| | || Sbjct 174109 GTGGCTGAGGCCCAGAAGAAGGGCGGCATCTGCGCCTTCATCGATGCCGAACACGCGCTC 174168 Query 66647 GACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCC 66706 ||||| | || ||| |||||| || | |||| | || || | |||||| Sbjct 174169 GACCCGGTCTATGCCCGCAAGCTCGGCGTCAATGTCGATGAACTTCTGATTTCGCAGCCC 174228 Query 66707 GATACCGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCC 66766 || |||||||||||| ||||| |||| ||| || || || |||| | ||| Sbjct 174229 GACCACGGCGAGCAGGCGCTGGAAATCGCCGACACGCTGGTGCGTTCCGGCGCG--GTCG 174286 Query 66767 ATCGTCG--TCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACA 66824 || | |||| ||||| ||||| || || |||||||||||||| ||||||||||| | Sbjct 174287 ATGTGCTGATCGTGGACTCGGTGGCAGCACTCGTGCCGCGCGCCGAACTCGAAGGCGAGA 174346 Query 66825 TCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCGCAAGCTCA 66884 | || || || | || ||||| ||||| || ||| ||||| |||||||||| | Sbjct 174347 TGGGCGATAGCCTTCCGGGTCTGCAGGCGCGGCTGATGAGCCAGGCGCTGCGCAAGCTGA 174406 Query 66885 CTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGA 66944 | | | ||| || || |||| || | ||| |||||||| | ||| ||||| Sbjct 174407 CCGCTTCGATCAACAAGTCCCACACCATGGTGATCTTCATCAACCAGATCCGCATGAAGA 174466 Query 66945 TCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGGTTCT 67004 |||| ||| |||||| || || |||||||| ||||| || || ||| ||||| Sbjct 174467 TCGGT---GTGATGTACGGCTCGCCGGAAACCACCACCGGCGGCAATGCGCTGAAGTTCT 174523 Query 67005 ACGCCTCAGTCCGTATGGATGTCCGTCGCATCGCCACCGAG-AAGGAAGGCGATGAGGCT 67063 |||| || || || | || |||| ||||||| | | || ||||| |||| || | Sbjct 174524 ACGCGTCCGTGCGCCTCGACATCCGCCGCATCGGC-CAGATCAAGGAGCGCGACGAAGTC 174582 Query 67064 GTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAAT 67123 ||||||||| ||||| || ||||| || |||||||||||||| |||||| | | Sbjct 174583 GTCGGCAACTCGACCCGCGTCAAGGTGGTGAAGAACAAGCTGGCGCCGCCGTTCAAGCAG 174642 Query 67124 GCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTG 67183 | ||| ||| | || ||||||| |||||| ||||| || |||| | ||||| || Sbjct 174643 GTCGAATTCGACATCATGTACGGCGAGGGCGTCTCGAAGATGGGCGAAATTCTCGATCTC 174702 Query 67184 GCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTC 67225 | ||| | ||| | || ||||||| |||||||||||| Sbjct 174703 GGCGTCAAGGCCGGCATTGTCGAGAAGTCCGGCGCCTGGTTC 174744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242692851283428