Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_028945.1 Length=206713 Score E Sequences producing significant alignments: (Bits) Value seq27440 109 7e-19 seq55600 84.2 3e-11 seq54491 84.2 3e-11 seq24082 84.2 3e-11 >seq27440 Length=426762 Score = 109 bits (120), Expect = 7e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 181461 GTCAGGAGCGCGTAAGAGGCGATGTTGAAGGGAAGCCCCAAGAAGACGTCCACGGACCGC 181520 || || |||| ||| ||||||||||||||||| | || | ||||||||| |||| ||| Sbjct 329379 GTGAGCAGCGAGTAGGAGGCGATGTTGAAGGGCACGCCGAGGAAGACGTCGGCGGAGCGC 329320 Query 181521 TGATTCCAAAGGCAGGACAGTTTGTCATTGCGAACATAGAACTGGAATCCGTAGTGGCAC 181580 |||| | |||||||| ||| | ||| || ||||||||||| | | |||||| Sbjct 329319 TGATAGAGCTGACAGGACAGCTTGCCGTTGGCGACGTAGAACTGGAACAGGCAATGGCAC 329260 Query 181581 GGCGGCAAAGCCATTAGATCGACCGCGCCGACATTCCAAGCCGAGACCAT 181630 ||||||| ||||| |||||| || | |||||| |||||||| || Sbjct 329259 GGCGGCAGCGCCATCTTGTCGACCTCGGCCGGATTCCACGCCGAGACGAT 329210 >seq55600 Length=68428 Score = 84.2 bits (92), Expect = 3e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 152804 AAGCTTCTTGTGCTGGACGAATGTTCGATGGTCAATGCGGAAATGCTTCTCGACTTGTTT 152863 ||||| | ||| | |||||||| |||||||| ||||||| | | |||| || | Sbjct 48341 AAGCTGATCGTGATCGACGAATGCTCGATGGTGGATGCGGAGCTCGGCCGCGACCTGATG 48282 Query 152864 ACATTCGAAATTCCGATGCTGGTGCTAGGCGATCCCGGACAGCTTCCGCCAATCGAAGGC 152923 | ||||| ||| |||||||||| |||||||| | ||| | ||||| || | ||| Sbjct 48281 TCGTTCGATTGCCCGCTGCTGGTGCTGGGCGATCCGGCGCAGTTGCCGCCGATTCAGGGC 48222 Query 152924 AGGAGTCCGCTT-ACTGATGTTCGCCCGGATGCGATGTTGACGGAAATCCATCGACAGGC 152982 || | | || || |||| |||||||||||| ||||||| | ||||| ||||| Sbjct 48221 -GGCGGCTTTTTCACCGATGCCGAGCCGGATGCGATGCTGACGGAGGTTCATCGTCAGGC 48163 Query 152983 AGAAGGCAACCCGAT 152997 | | | | | ||||| Sbjct 48162 ACAGGACGATCCGAT 48148 >seq54491 Length=272697 Score = 84.2 bits (92), Expect = 3e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 181461 GTCAGGAGCGCGTAAGAGGCGATGTTGAAGGGAAGCCCCAAGAAGACGTCCACGGACCGC 181520 ||||| ||||| || || ||||||||||| || | || | || |||||| | || ||| Sbjct 166066 GTCAGCAGCGCATAGGACGCGATGTTGAACGGCACGCCGAGAAATACGTCCGCCGAACGC 166125 Query 181521 TGATTCCAAAGGCAGGACAGTTTGTCATT-GCGAACATAGAACTGGAATCCGTAGTGGCA 181579 || | | ||||||||| ||| | || ||| |||||||||||||| | |||| || Sbjct 166126 TGGTACAGTTGGCAGGACAATTTTCCGTTAGCG-ACATAGAACTGGAACAGGCAGTGACA 166184 Query 181580 CGGCGGCAAAGCCATTAGATCGACCGCGCCGACATTCCAAGCCGAGACCATATGACGACG 181639 ||| |||| ||||| ||||| || || |||||| || ||| || | ||||| Sbjct 166185 CGGAGGCAGCGCCATCTTGTCGACGTCGGCGGGATTCCACGCACTGACGATCAGGCGACG 166244 >seq24082 Length=208990 Score = 84.2 bits (92), Expect = 3e-11 Identities = 131/183 (72%), Gaps = 6/183 (3%) Strand=Plus/Minus Query 152819 GACGAATGTTCGATGGTCAATGCGGAAATGCTTCTCGACTTGTTTACATTCGAAATTCCG 152878 |||||||| ||||||||| |||| ||| || | ||||||| | | ||||| || Sbjct 158579 GACGAATGCTCGATGGTCGATGCCGAATTGGGGCGCGACTTGATGTCGTTCGACTGCCCT 158520 Query 152879 ATGCTGGTGCTAGGCGATCCCGGACAGCTTCCGCCAATCGAAGGCAGGAGTCCGCTT-AC 152937 | ||||||| |||||||||| ||||| ||||| ||| | ||| || | | ||| || Sbjct 158519 CTCTTGGTGCTGGGCGATCCCGCGCAGCTGCCGCCGATCCAGGGC-GGCGGCTTCTTCAC 158461 Query 152938 TGATGTTCGC--CCGGATGCGATGTTGACGGAAATCCATCGACAGGCAGAAGGCAACCCG 152995 || ||| |||||||||||| |||| || | ||||| ||||| | | | | ||| Sbjct 158460 CAAT--TCGGAGCCGGATGCGATGCTGACCGAGGTGCATCGTCAGGCCCAGGACGATCCG 158403 Query 152996 ATC 152998 ||| Sbjct 158402 ATC 158400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 660884518425360