Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq32030 149 2e-31 seq34751 129 2e-25 >seq32030 Length=166927 Score = 149 bits (164), Expect = 2e-31 Identities = 286/416 (69%), Gaps = 12/416 (3%) Strand=Plus/Minus Query 39349 CTTGGTCAGCTTCTCGCCGACCTG---AAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTT 39405 ||| || ||||| ||| ||||| | ||||| | | || |||||| | |||| Sbjct 86194 CTTCGTGAGCTTGTCG---ACCTGGCCATAGGGCATCTGGAGGACGCGGCCGACGTCGCG 86138 Query 39406 CATCGCGTTGCGGGCCTTGATCCTGCCGTACGTCGCGATCTGTGCGACCTTGTCGCTGCC 39465 || | | ||| |||| | | | ||| | || |||||| ||||||| ||||| ||| Sbjct 86137 CAGCACCCCGCGCGCCTGCAGCGTACCGAAGGTGATGATCTGCGCGACCTGGTCGCGGCC 86078 Query 39466 GTACTTCTCGGTG-ACGTACCGGATCACGTCGCCACGGCGA--CGGTCATCGAAGTCGAT 39522 ||| || | || ||||| | |||||| ||||| |||||| | | || ||| ||||| Sbjct 86077 GTAGCGCT-GCTGCACGTAACTGATCACCTCGCCGCGGCGATCCTGGCA--GAAATCGAT 86021 Query 39523 GTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTG 39582 ||| | ||| ||||| |||||||| || || || ||||| |||||||| | || ||| Sbjct 86020 GTCGAAGTCCGGCATCGAGACGCGTTCGGGATTGAGGAAGCGCTCGAACAGCAGGCCGAA 85961 Query 39583 AGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGA 39642 ||| || || ||||||||||| || || ||||| |||||||||| || | || Sbjct 85960 CTTGATCGGATCGAGGTCGGTGATGGTCAGCGCCCACGCGACCAGCGAGCCGGCGCCGGA 85901 Query 39643 GCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGAC 39702 ||| || || || ||||| | || | ||| ||||| ||||||||||| || Sbjct 85900 GCCGCGGCCCGGCCCGACGGGAATGCCTTGGCTCTTTGCCCATTTGATGAAGTCGGACAC 85841 Query 39703 GACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTAGTCGA 39758 || |||||||| || | | ||| || |||| | ||| | |||| || ||| Sbjct 85840 GATCAGGAAGTAGCCCGCGTATTTCATGCGGGTGATGACGTCCAGCTCGAAGGCGA 85785 Score = 107 bits (118), Expect = 6e-19 Identities = 269/407 (66%), Gaps = 34/407 (8%) Strand=Plus/Minus Query 38548 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTG 38607 || |||| ||| | | || | ||||||||||||||||||| || ||||||||||| | Sbjct 86950 CTGCTTGTCCATCTCGGCGCGGATCTTCTTGCCCATGGCGCGGCGCAGAAGGTCGGCGTC 86891 Query 38608 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38667 ||||| | || || | || | |||||| || | |||||| |||||||||||||| Sbjct 86890 GCCGAGCGAATAGCCCGACATCACCTGCGCGATCTGCATCACCTGTTCCTGGTAGATGAT 86831 Query 38668 GAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCGGCTCCTCCACCTCGGGGTGGATCGG 38727 || ||||||||| | ||||| |||| ||||| | |||| || | || Sbjct 86830 GACGCCGAAGGTCTCTTTCAGGA--TCGG----------CTCCAGCACGGGATGCA--GG 86785 Query 38728 CGTGAT--CTCCTGCTGCCCGTTCTTGCGGAGGGCGTAGTTCG---TGTGCGAGCCCATG 38782 | | ||||| | |||| |||||| | ||| ||| ||| || Sbjct 86784 TATTCTGGCTCCTCGTCGCCGTGCTTGCGCGCGCAATAGGTCGGAATGTTCG-------- 86733 Query 38783 CCCATCGGACCCGGACGGTACAGCGCCACGACGGCGGAGATGTCCTCGAACTGGTCCGGC 38842 ||||||| ||||| || || |||||||| | ||| |||||||||||| |||| || Sbjct 86732 -CCATCGGGCCCGGGCGATAGAGCGCCACCAGCGCGATGATGTCCTCGAAACGGTCAGG- 86675 Query 38843 TTCAGCAGGCGGAGCAGGGAGCGCATCGCGCC---GCCGTCGAGCTGGAACACCGAGAGC 38899 ||| | || ||| | ||| || ||| || || | ||||||||| || | Sbjct 86674 --GCGCATGTCGATCAGCGCCCGCCTCATGCCCTGGCTTTCAACCTGGAACACGCCGACC 86617 Query 38900 GTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCATCCAGCGG 38946 |||||| | ||||||| | |||| || ||| || || | ||| Sbjct 86616 ACGTCGCCGCGCGCCAGCATCGCGTAGCTCTCGGCATCGTCGATCGG 86570 >seq34751 Length=230815 Score = 129 bits (142), Expect = 2e-25 Identities = 219/316 (69%), Gaps = 6/316 (2%) Strand=Plus/Plus Query 39442 GATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACG 39501 |||||| |||||| |||| |||||| ||| ||||| |||||||| ||||| Sbjct 178868 GATCTGGCCGACCTGATCGCGGCCGTAGCGCTCCTGCACGTAGCGGATCACCTCGCC--- 178924 Query 39502 GCGACGGTCATC---GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAG 39558 ||| ||||| | |||||||||||| | ||| ||||| |||||||| || || || || Sbjct 178925 GCGCCGGTCCTGACAGAAGTCGATGTCGAAGTCCGGCATCGAGACGCGTTCCGGATTGAG 178984 Query 39559 GAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTA 39618 ||| |||||||| | || ||| |||| || || |||||||| || | ||||| Sbjct 178985 GAAGCGCTCGAACAGCAGACCGAACCGGATCGGATCGAGGTCGGTAATGGTCAATGCGTA 179044 Query 39619 CGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTT 39678 || |||||||||| || | || || || || || |||||| | || | ||| Sbjct 179045 AGCCACCAGCGAGCCTGCGCCCGAACCGCGGCCCGGCCCGACCGGAATGCCCTCGGACTT 179104 Query 39679 CGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGAT 39738 ||| ||||||||| | ||||| |||||||| || | |||| || |||| Sbjct 179105 CGCATGCTTGATGAAGTCCGAGACGATCAGGAAGTATCCCGAATAGTTCATCCGGGTGAT 179164 Query 39739 CATGTCGATCTCGTAG 39754 | ||||||||| || Sbjct 179165 GACATCGATCTCGAAG 179180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160132028485300