Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_028980.1 Length=62181 Score E Sequences producing significant alignments: (Bits) Value seq55600 102 3e-17 seq24082 84.2 9e-12 >seq55600 Length=68428 Score = 102 bits (112), Expect = 3e-17 Identities = 111/146 (76%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 32113 GAGGAGTTCGACTATGGCTATGCGCTCACCGTCCACAAGTCGCAGGGCTCCCAGTGGAAC 32172 || ||||||||||| ||||||| ||| ||||| ||||| || ||||| |||||||||||| Sbjct 47720 GACGAGTTCGACTACGGCTATGTGCTGACCGTGCACAAATCCCAGGGTTCCCAGTGGAAC 47661 Query 32173 AACGTCCTGCTGTTTGACGAGTGGTACG---GGAAGGA---CCGGAAGGAATGGTTGTAC 32226 ||||| ||||||| |||||| | | || |||| ||| ||| | ||| Sbjct 47660 GACGTCGTGCTGTTCGACGAGAGCTTCGCCTTCCAGGACAGCCGCGCCCGCTGGCTCTAC 47601 Query 32227 ACCGCCATTACCCGGGCCGCGGAACG 32252 |||| ||||||||| |||||| |||| Sbjct 47600 ACCGGCATTACCCGCGCCGCGAAACG 47575 Score = 87.8 bits (96), Expect = 7e-13 Identities = 163/239 (68%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 31496 AGGCCGCGCTGCTCGTGGTGGATGAGTATTCCATGATTGACGAGCAGATGGGGGAGGACT 31555 ||||| |||| ||||| | || || | || ||| | || | | || | || ||| Sbjct 48346 AGGCCAAGCTGATCGTGATCGACGAATGCTCGATGGTGGATGCGGAGCTCGGCCGCGACC 48287 Query 31556 TGCTCAGCTTCGGTTGCCCGATCCTCGCCCTGGGCGATCCGGGGCAGCTCCCGCCCGT-- 31613 || | |||| ||||||| | || | ||||||||||||| |||| | ||||| | Sbjct 48286 TGATGTCGTTCGATTGCCCGCTGCTGGTGCTGGGCGATCCGGCGCAGTTGCCGCCGATTC 48227 Query 31614 -GGGCGGCACCCCCTTCTTCAAGAACAAGCCCGACATCCTGCTCACGGAGATTCACCGCC 31672 ||||||| | ||| | | | |||| || |||| |||||| |||| || | Sbjct 48226 AGGGCGGCGGCTTTTTCACCGATGCCGAGCCGGATGCGATGCTGACGGAGGTTCATCGTC 48167 Query 31673 AGGCCCAGGACAACCCGATCATCTGGATGTCCAAGGAGGTCCGCGAGGGCCGCGTGCTC 31731 |||| |||||| | ||||| | ||||||| | || ||| ||||| ||||||| |||| Sbjct 48166 AGGCACAGGACGATCCGATTGTGCGGATGTCGATGGCGGTGCGCGAAGGCCGCGCGCTC 48108 Score = 84.2 bits (92), Expect = 9e-12 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 31146 GCCCGTGTTCCAGCTCGCCGGGTACGCCGGAACCGGCAAGACCACCCTGGCCAAACACCT 31205 ||| ||||||| ||| ||| || ||||| |||||||||||||||||||| || | Sbjct 48582 GCCGGTGTTCCGGCTGTTCGGCTATGCCGGCACCGGCAAGACCACCCTGGCGCGGCATAT 48523 Query 31206 CGCCGCGACCGTCAACGGTCCCGTGTACTTCGCCGCCTACACCGGCAAGGCCGC 31259 ||| | ||||||||| |||| | ||||| || | ||||||||||||||| Sbjct 48522 CGCGGACGGCGTCAACGGCAACGTGAAATTCGCAGCGTTCACCGGCAAGGCCGC 48469 >seq24082 Length=208990 Score = 84.2 bits (92), Expect = 9e-12 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 32113 GAGGAGTTCGACTATGGCTATGCGCTCACCGTCCACAAGTCGCAGGGCTCCCAGTGGAAC 32172 || |||||||| || ||||| | ||| ||||| ||||||||||||||||| || ||| || Sbjct 157970 GACGAGTTCGATTACGGCTACGTGCTGACCGTGCACAAGTCGCAGGGCTCGCAATGGGAC 157911 Query 32173 AACGTCCTGCTGTTTGACGAG 32193 | ||| ||||||| |||||| Sbjct 157910 GATGTCGTGCTGTTCGACGAG 157890 Score = 84.2 bits (92), Expect = 9e-12 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 31146 GCCCGTGTTCCAGCTCGCCGGGTACGCCGGAACCGGCAAGACCACCCTGGCCAAACACCT 31205 ||| ||||||| || ||| | ||||| |||||||||||||| ||||| ||| | Sbjct 158835 GCCGGTGTTCCGCCTGTTCGGCTTTGCCGGCACCGGCAAGACCACGCTGGCGCGGCACAT 158776 Query 31206 CGCCGCGACCGTCAACGGTCCCGTGTACTTCGCCGCCTACACCGGCAAGGCCGCTCACGT 31265 ||||| | |||| | || ||| | |||||||||| ||||||||||||||| | ||| Sbjct 158775 CGCCGAGGGCGTCGATGGCGAGGTGAAGTTCGCCGCCTTCACCGGCAAGGCCGCACTCGT 158716 Query 31266 C 31266 | Sbjct 158715 C 158715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198716883606804