Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_029046.1 Length=50827 Score E Sequences producing significant alignments: (Bits) Value seq36931 127 7e-25 seq24986 100 9e-17 seq54446 86.0 2e-12 >seq36931 Length=650932 Score = 127 bits (140), Expect = 7e-25 Identities = 166/226 (73%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 18107 GCGCTACAGCGGCAATCGGGTCAATGAGATCGCCGAGATCACCTCCGGCTTGAAGTCGCT 18166 |||| ||||| || || || | |||||| | |||||||| || || ||||| |||| Sbjct 153548 GCGCGCCAGCGACAGCCGCGTGCAGGAGATCACGGAGATCACGACCAGCCTGAAGGCGCT 153489 Query 18167 CGCCAGAGAGCTCGATATCGCCGTCGTTTTGCTGTCGCAGCTTAATCGAG-CAGTCGAGA 18225 ||||| ||||||| | || |||| || |||||| ||||| ||| | ||| | | Sbjct 153488 CGCCAAAGAGCTCAACGTCCCCGTGATTGCGCTGTCCCAGCTG--TCGCGTCAGGTGGAA 153431 Query 18226 GCA-GAGAGGATAAGCGACCTCTTCTCTCAGACCTTCGCGATTCCGGTGCGATCGAGCAG 18284 | | || || ||||| || | ||||| ||||| ||||| ||||| ||||||||||| Sbjct 153430 TCGCGCGACGACAAGCGCCCGCAACTCTCGGACCTGCGCGAATCCGGCTCGATCGAGCAG 153371 Query 18285 GACGCCGACATGATCGCGTTCTTGTTCCGTGAGGCCTACTACCTCG 18330 ||||||||| | | |||| ||||||| |||| |||||||||| Sbjct 153370 GACGCCGACGTCGTGCTGTTCGTGTTCCGCGAGGAATACTACCTCG 153325 Score = 86.0 bits (94), Expect = 2e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 21148 GTCGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAA 21207 ||||| || |||||||||||||||||| ||||||||||| ||||| ||||||||| Sbjct 417881 GTCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCAGAGGTTCGAA 417940 Query 21208 TCCTGTCTCCGCAACCA 21224 |||| || ||||||||| Sbjct 417941 TCCTCTCCCCGCAACCA 417957 >seq24986 Length=52538 Score = 100 bits (110), Expect = 9e-17 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 18128 CAATGAGATCGCCGAGATCACCTCCGGCTTGAAGTCGCTCGCCAGAGAGCTCGATATCGC 18187 ||| |||||| |||||||||| | || ||||| |||| || | |||||| | || | Sbjct 6599 CAAGGAGATCACCGAGATCACGACGGGGCTGAAGGCGCTGGCGAAGGAGCTCAACGTCCC 6658 Query 18188 CGTCGTTTTGCTGTCGCAGCTTAATCGAGCAGTCGAGAGCAGAGAGGATAAGCGACCTCT 18247 | || | || || ||||| || |||||| | | ||||| ||||| || | Sbjct 6659 CATCATCGCACTCTCCCAGCTCTCCCGCCTGCTCGAGAACCGGGAGGAGAAGCGGCCGCA 6718 Query 18248 TCTCTCAGACCTTCGCGATTCCGGTGCGATCGAGCAGGACGCCGACATGATCGCGTTCTT 18307 | || ||||| ||||| |||||| |||||||||||||||| ||| || | ||| | Sbjct 6719 ATTGTCGGACCTGCGCGAATCCGGTTCGATCGAGCAGGACGCGGACGTGGTGCTATTCGT 6778 Query 18308 GTTCCGTGAGGCCTACTACCTCGAA 18332 ||| ||||||| || |||||| || Sbjct 6779 GTTTCGTGAGGAATATTACCTCAAA 6803 >seq54446 Length=153271 Score = 86.0 bits (94), Expect = 2e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||||||||||||||| ||||||||||| |||||| |||||| |||| Sbjct 25762 CGGGGTAGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTTCAAATC 25703 Query 21210 CTGTCTCCGCAACCA 21224 ||| | ||||||||| Sbjct 25702 CTGCCCCCGCAACCA 25688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162415288961356