Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_029073.1 Length=141298 Score E Sequences producing significant alignments: (Bits) Value seq54446 145 7e-30 >seq54446 Length=153271 Score = 145 bits (160), Expect = 7e-30 Identities = 331/495 (67%), Gaps = 6/495 (1%) Strand=Plus/Minus Query 69410 CTTCTGCTAATTCTGCGCTAGTTTTATATGCTTGACCTGTCAAAATAGAAGTTAATACTC 69469 ||| ||||| |||||| |||| |||| || |||||||| ||| | | || | Sbjct 78820 CTTTTGCTATTTCTGCTGAAGTTGTATAAGCCACACCTGTCATAATGGCGGCCAACGACC 78761 Query 69470 CTGCTAACGCACGTCCTTCATCAGAATCATAAGGTAAGCCCAATGTCATTAATAATTGTC 69529 | || | || ||| |||| | ||||||||| | |||||| | |||||| ||| | Sbjct 78760 CAGCAATGGCGCGTGCTTCTTTGCTATCATAAGGAACGCCCAAGGCCATTAACAATCCGC 78701 Query 69530 CTAAATTGCCATATCCCAATCCAGTTGTGCGATAATTATATGTACCAATTGCGATTTCTT 69589 | | |||| ||||||| || || ||| ||| || |||| | | || ||||||| Sbjct 78700 CCACATTGGCATATCCTAAACCTAATGTTCGAAAAATATAAGATCTTTCAGCAATTTCTT 78641 Query 69590 TGCTTGGCAATTGTGCCATTGTTACTGAAATATCAAGAACAATTTGCCACAATCTAATTG 69649 | ||| ||||| ||||| | |||||||| || |||| |||| ||| | | ||| | Sbjct 78640 TAGATGGGAATTGGGCCATCATCACTGAAATTTCTAGAATAATTGTCCAAATTGTAACGG 78581 Query 69650 CGTGTAAATATGCTTTAAGATTAAATTCATATGTTTCTGTGTCTAAGAATTTCATTAAAT 69709 |||| ||| || | |||||| | | | || | | | || || | ||| | Sbjct 78580 CGTGCTCATAACTTTCGATATTAAA---AGTTTTATCCGGG-CAAAACATGGC--TAAGT 78527 Query 69710 TAATTGATGCAAGATTGCAAGCTGTATCATCTAAGAAGTGATACTCCGAGCAAGGATTGG 69769 | | ||||| | ||| || ||||||||||| ||||| ||| || || |||||||||| Sbjct 78526 TCAAGGATGCCAAATTACATGCTGTATCATCCAAGAACATATATTCTGAACAAGGATTGG 78467 Query 69770 ATGAATTAATTTCTCCATCATTTGCACAAGTATTCCATTCGTTAATTGTTGTATGATATT 69829 || ||| || || || |||||||| ||| || ||||||||||||| | | | Sbjct 78466 ATCCATTGATACGACCGCTGGCTGGACAAGTATGCCACTCATTAATTGTTGTATCAAACT 78407 Query 69830 GTAAAGCAGGATCAGCGCATCTCCAACCTGCATAATTTAtttttttCCATAAATATTGTG 69889 | | | || || || | |||| | |||||| ||||| | |||||||| ||| Sbjct 78406 GAACCCCGGGGTCCGCTGAGGCCCAAGCCGCATAACCAATTTTCTCCCATAAATCACGTG 78347 Query 69890 CTTTTACTTTTTTAT 69904 |||| || | |||| Sbjct 78346 CTTTGACAGTCTTAT 78332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451704989542560