Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq55957 306 2e-78 seq54303 304 6e-78 >seq55957 Length=247269 Score = 306 bits (338), Expect = 2e-78 Identities = 528/762 (69%), Gaps = 9/762 (1%) Strand=Plus/Plus Query 66090 ATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGC 66149 ||| || | ||||| | | |||||| ||| ||||||||||| || | || | ||| Sbjct 173989 ATTTCCTCGGGCTCGCTGGGGCTGGACATCGCGCTGGGCATCGGTGGCTTGCCCAAGGGG 174048 Query 66150 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 66209 |||||| | || || ||||| || ||||| || || ||| |||| ||| || ||| Sbjct 174049 CGGGTGATCGAGATTTACGGGCCGGAATCCTCCGGCAAGACAACGCTGGCGCTGCACTGC 174108 Query 66210 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCTGCCTACATCGACGCTGAGCACTCCCTG 66269 ||||| | ||||||||| || |||| | |||| |||||| || || ||| | || Sbjct 174109 GTGGCTGAGGCCCAGAAGAAGGGCGGCATCTGCGCCTTCATCGATGCCGAACACGCGCTC 174168 Query 66270 GACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCG 66329 ||||| | || ||| |||||| || | |||| | || || | ||||| Sbjct 174169 GACCCGGTCTATGCCCGCAAGCTCGGCGTCAATGTCGATGAACTTCTGATTTCGCAGCCC 174228 Query 66330 GACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCC 66389 ||| ||||||||||| ||||| |||| ||| || || || |||| | ||| Sbjct 174229 GACCACGGCGAGCAGGCGCTGGAAATCGCCGACACGCTGGTGCGTTCCGGCGCG--GTCG 174286 Query 66390 ATCGTCG--TCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACA 66447 || | |||| ||||| ||||| || || |||||||||||||| ||||||||||| | Sbjct 174287 ATGTGCTGATCGTGGACTCGGTGGCAGCACTCGTGCCGCGCGCCGAACTCGAAGGCGAGA 174346 Query 66448 TCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCA 66507 | || || || | || ||||| ||||| || ||| ||||| |||||||||| | Sbjct 174347 TGGGCGATAGCCTTCCGGGTCTGCAGGCGCGGCTGATGAGCCAGGCGCTGCGCAAGCTGA 174406 Query 66508 CCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGA 66567 ||| | ||| || || |||| || | ||| |||||||| | ||| ||||| Sbjct 174407 CCGCTTCGATCAACAAGTCCCACACCATGGTGATCTTCATCAACCAGATCCGCATGAAGA 174466 Query 66568 TCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCT 66627 |||| ||| |||||| || || |||||||| |||||||| || ||| ||||| Sbjct 174467 TCGGT---GTGATGTACGGCTCGCCGGAAACCACCACCGGCGGCAATGCGCTGAAGTTCT 174523 Query 66628 ACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAG-AAGGAAGGCGATGAGGCT 66686 |||| || || ||| | || |||| ||||||| | | || ||||| |||| || | Sbjct 174524 ACGCGTCCGTGCGCCTCGACATCCGCCGCATCGGC-CAGATCAAGGAGCGCGACGAAGTC 174582 Query 66687 GTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAAT 66746 ||||||||| ||||| || ||||| || |||||||||||||| |||||| | | Sbjct 174583 GTCGGCAACTCGACCCGCGTCAAGGTGGTGAAGAACAAGCTGGCGCCGCCGTTCAAGCAG 174642 Query 66747 GCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTG 66806 | ||| ||| | || ||||||| |||||| ||||| || |||| | ||||| || Sbjct 174643 GTCGAATTCGACATCATGTACGGCGAGGGCGTCTCGAAGATGGGCGAAATTCTCGATCTC 174702 Query 66807 GCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTC 66848 | ||| | ||| | || ||||||| |||||||||||| Sbjct 174703 GGCGTCAAGGCCGGCATTGTCGAGAAGTCCGGCGCCTGGTTC 174744 >seq54303 Length=793959 Score = 304 bits (336), Expect = 6e-78 Identities = 531/761 (70%), Gaps = 15/761 (2%) Strand=Plus/Plus Query 66094 CCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGG-TACCCGAGGGGCCGG 66152 || ||||||| ||| || || ||| || |||||||| || | ||| |||||| | Sbjct 1494 CCTCCGGCTCCCTCGGGCTTGATATCGCGCTCGGCATCGGCGGCCTGCCCAAGGGGC-GT 1552 Query 66153 GTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTG 66212 || || || |||||||| || ||||| || || ||| | || ||| || || ||||| Sbjct 1553 GTCGTCGAGATCTACGGGCCGGAATCGTCGGGCAAGACGACGCTGGCGCTGCATACGGTG 1612 Query 66213 GCCAATGCCCAGAAGGCCGGTGGCAACGCTGCCTACATCGACGCTGAGCACTCCCTGGAC 66272 || | || |||||| || |||| |||| |||||||| |||||| | || ||| Sbjct 1613 GCGGAGGCGCAGAAGAAGGGCGGCATTTGCGCCTTTATCGACGCCGAGCACGCGCTCGAC 1672 Query 66273 CCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGAC 66332 || | || ||| ||| || || || ||||| | || || | ||||| ||| Sbjct 1673 CCGGTCTATGCCCGCAAGCTGGGCGTCAACATCGACGAGCTGCTGATCTCGCAGCCCGAC 1732 Query 66333 ACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCA-- 66390 || ||||||||||| ||||||||| ||| | | || || || | | ||| | Sbjct 1733 ACCGGCGAGCAGGCGCTGGAGATCTGCGACACCTTGGTGCGCTCCGGTG--CCGTCGACG 1790 Query 66391 TCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCG 66450 | |||| || || || || ||||| ||||||||| ||||||||||| ||||| || | Sbjct 1791 TTCTCGTGGTCGATTCGGTCGCGGCGCTGGTGCCGAAGGCCGAGCTCGAGGGCGAGATGG 1850 Query 66451 GGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCG 66510 | ||| | |||||||| || ||| | ||| ||||| | ||||||||||| | Sbjct 1851 GCGACGCGCTGCCGGGCCTGCAGGCCCGCTTGATGAGCCAGGCGCTACGCAAGCTCACGG 1910 Query 66511 GCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCG 66570 | ||||| || |||||||| || | ||| |||||||| | ||| |||||||| Sbjct 1911 CCTCCATCAACAAGTCCAACACGATGGTGATCTTCATCAACCAGATCCGCATGAAGATCG 1970 Query 66571 GCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACG 66630 || ||| |||||| || || || ||||| |||||||| || ||| ||||||| Sbjct 1971 GC---GTGATGTACGGCTCGCCTGAAACGACCACCGGCGGCAATGCGCTGAAATTCTACG 2027 Query 66631 CCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCG 66690 ||||||||||| | || |||| ||||||| | | ||||| | || |||| |||| Sbjct 2028 CCTCAGTCCGCCTCGACATCCGCCGCATCGGCGCGATCAAGGAGCGTGACGAGGTGGTCG 2087 Query 66691 GCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCAC-CGCA-ATGC 66748 ||||| ||| || || ||||| || |||||||||||||| ||||| | ||| || Sbjct 2088 GCAACACCACGCGCGTCAAGGTGGTGAAGAACAAGCTGGCGCCGCCCTTCAAGCAGAT-- 2145 Query 66749 CGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGA-GGTCGAACTCCTCGACCTGG 66807 ||||||| | || ||||||| |||||| |||| | || || || ||||||| || | Sbjct 2146 CGAGTTCGACATCATGTACGGCGAGGGCGTCTC-CAAGATGGGTGAGATCCTCGATCTCG 2204 Query 66808 CCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTC 66848 ||| | ||| | || ||||||| |||||||||||| Sbjct 2205 GCGTCAAGGCCGGCATCGTCGAGAAGTCCGGCGCCTGGTTC 2245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240793365768600