Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq27440 107 2e-18 seq54491 91.5 1e-13 >seq27440 Length=426762 Score = 107 bits (118), Expect = 2e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTC 34635 ||||||||| || |||||||| ||| | ||| ||||||||||| || || ||||||| Sbjct 329245 GATGGCGCTGCCGCCGTGCCATTGCCTGTTCCAGTTCTACGTCGCCAACGGCAAGCTGTC 329304 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 ||| ||||||||||| || || | ||| | | || ||||| |||||||| || Sbjct 329305 CTGTCAGCTCTATCAGCGCTCCGCCGACGTCTTCCTCGGCGTGCCCTTCAACATCGCCTC 329364 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGT 34755 ||| | |||||||| ||| | || || ||| || || || || || | || Sbjct 329365 CTACTCGCTGCTCACCATGATGGTGGCGCAGGTCACCGGTCTGAAGCCCGGCGATTTCGT 329424 Query 34756 GCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGC 34799 |||| |||| || || |||||| |||| |||||| | |||| Sbjct 329425 GCATTCGTTCGGCGACGCGCATCTCTATTCCAACCACCTGGAGC 329468 Score = 107 bits (118), Expect = 2e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 6546 GCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAA 6605 |||| | |||||| |||| |||||| || || |||| |||||| | || || || Sbjct 329468 GCTCCAGGTGGTTGGAATAGAGATGCGCGTCGCCGAACGAATGCACGAAATCGCCGGGCT 329409 Query 6606 CCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACG 6665 || || ||| || || | ||| |||||||| | ||| || |||||||| | Sbjct 329408 TCAGACCGGTGACCTGCGCCACCATCATGGTGAGCAGCGAGTAGGAGGCGATGTTGAAGG 329349 Query 6666 GCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCG 6725 |||| || | | ||| | || || ||||||||||| |||||||||| || || | Sbjct 329348 GCACGCCGAGGAAGACGTCGGCGGAGCGCTGATAGAGCTGACAGGACAGCTTGCCGTTGG 329289 Query 6726 CGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATC 6769 |||||||||| ||| | ||| |||||||| || ||||||||| Sbjct 329288 CGACGTAGAACTGGAACAGGCAATGGCACGGCGGCAGCGCCATC 329245 >seq54491 Length=272697 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 6530 AGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGC 6589 || || | |||| | | |||| |||||| |||| ||||||||| || | || |||| Sbjct 165961 AGTTGCAGCCGGGCCTGATCGAGATGGTTCGAATAGAGATGCGCATCGCCGAGCGAATGC 166020 Query 6590 ACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAA 6649 || | || || || || ||| || || || | ||| || ||||| || || Sbjct 166021 ACGAAGTCGCCGGGCTTCAGCCCAGTCACCTGCGCCACCATCATGGTCAGCAGCGCATAG 166080 Query 6650 CTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709 || |||||||||||||| || | | ||| |||| || || || || |||||| Sbjct 166081 GACGCGATGTTGAACGGCACGCCGAGAAATACGTCCGCCGAACGCTGGTACAGTTGGCAG 166140 Query 6710 GACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATC 6769 |||| | || || ||||| ||||| ||| | ||| ||| ||||| || ||||||||| Sbjct 166141 GACAATTTTCCGTTAGCGACATAGAACTGGAACAGGCAGTGACACGGAGGCAGCGCCATC 166200 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTC 34635 ||||||||| || ||||| ||| ||| | ||| ||||| ||||| || || | |||| Sbjct 166200 GATGGCGCTGCCTCCGTGTCACTGCCTGTTCCAGTTCTATGTCGCTAACGGAAAATTGTC 166141 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 |||||| || || || || |||| ||| | | || |||||||||||||| || Sbjct 166140 CTGCCAACTGTACCAGCGTTCGGCGGACGTATTTCTCGGCGTGCCGTTCAACATCGCGTC 166081 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGT 34755 || || ||||| || ||| | || || || ||| || || || || | || Sbjct 166080 CTATGCGCTGCTGACCATGATGGTGGCGCAGGTGACTGGGCTGAAGCCCGGCGACTTCGT 166021 Query 34756 GCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCT 34815 |||| || | || ||||||||| |||| |||||| |||| | | |||| | || || Sbjct 166020 GCATTCGCTCGGCGATGCGCATCTCTATTCGAACCATCTCGATCAGGCCCGGCTGCAACT 165961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447944458686240