Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq27440 89.7 4e-13 seq27656 82.4 6e-11 >seq27440 Length=426762 Score = 89.7 bits (98), Expect = 4e-13 Identities = 192/287 (67%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 27163 TAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 27222 |||| || ||||| || | | || || || || || || | || |||||||| || Sbjct 329451 TAGAGATGCGCGTCGCCGAACGAATGCACGAAATCGCCGGGCTTCAGACCGGTGACCTGC 329392 Query 27223 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 27282 |||| ||| ||||| || |||||| ||||||||| ||||| || ||||| | | Sbjct 329391 GCCACCATCATGGTGAGCAGCGAGTAGGAGGCGATGTTGAAGGGCACGCCGAGGAAGACG 329332 Query 27283 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACAT 27342 || | || | ||| ||||||||||| || |||| || | | ||||| ||||| | Sbjct 329331 TCGGCGGAGCGCTGATAGAGCTGACAGGACAGCTTGCCGTTGGCGACGTAGAACTGGAAC 329272 Query 27343 ATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACG 27402 | | |||||||| || || ||||| | | | || || ||||| || | ||| Sbjct 329271 AGGCAATGGCACGGCGGCAGCGCCATCTTGTCGACCTCGGCCGGATTCCACGCCGAGACG 329212 Query 27403 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTT 27449 || | ||| | || || ||| | |||| | ||||||| |||| Sbjct 329211 ATCAGGCGGCGCGAGTCCGGATTGCGCTTGATCATGTCCACGACGTT 329165 >seq27656 Length=1108 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 48539 ACCCAGAGATGGGTGACAAGTTTGCGTCCTT-CACGGCGCAAAAGGG-GACATGTGG-AG 48595 |||| | ||| || |||||||| ||||| ||||| ||| ||||| | ||||| || Sbjct 821 ACCCGGTGATCGGAGACAAGTTCGCGTCGAGGCACGG-GCAGAAGGGCGTCATGTCCCAG 879 Query 48596 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 48655 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 880 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 937 Query 48656 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 48687 ||||||| |||||||| ||||| | |||||| Sbjct 938 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369251669836202