Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq24986 91.5 5e-14 seq36931 87.8 6e-13 >seq24986 Length=52538 Score = 91.5 bits (100), Expect = 5e-14 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34064 ACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTCGCGCAGGTCCGACA 34123 ||||||| | | |||||| |||||||||||||||| ||||| |||||||||||||||| Sbjct 6780 ACACGAATAGCACCACGTCCGCGTCCTGCTCGATCGAACCGGATTCGCGCAGGTCCGACA 6721 Query 34124 TCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTGAGCTGCGACAGCACGATCA 34183 ||| ||||| | | ||| | ||| || |||| |||||| || || |||| | Sbjct 6720 ATTGCGGCCGCTTCTCCTCCCGGTTCTCGAGCAGGCGGGAGAGCTGGGAGAGTGCGATGA 6661 Query 34184 CGGGGATACCAAGCTCCATGGCCAG 34208 ||||| |||||| | ||||| Sbjct 6660 TGGGGACGTTGAGCTCCTTCGCCAG 6636 >seq36931 Length=650932 Score = 87.8 bits (96), Expect = 6e-13 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 34054 TCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTCGCGC 34113 || || ||| ||||||||| | |||||||||||||||||||||| ||||| |||||| Sbjct 153336 TCCTCGCGGAACACGAACAGCACGACGTCGGCGTCCTGCTCGATCGAGCCGGATTCGCGC 153395 Query 34114 AGGTCCGACATCATCGGTCGCTTGTTCGGC-CGCTGCTCCAGGGAGCGGTTGAGCTGCGA 34172 |||||||| | ||| |||||| ||| | ||| |||| || ||||| || Sbjct 153396 AGGTCCGAGAGTTGCGGGCGCTTG-TCGTCGCGCGATTCCACCTGACGCGACAGCTGGGA 153454 Query 34173 CAGCACGATCACGGGGA 34189 |||| | |||||||||| Sbjct 153455 CAGCGCAATCACGGGGA 153471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160355877551580