Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_030929.1 Length=49033 Score E Sequences producing significant alignments: (Bits) Value seq29763 120 1e-22 >seq29763 Length=69847 Score = 120 bits (132), Expect = 1e-22 Identities = 219/314 (70%), Gaps = 14/314 (4%) Strand=Plus/Plus Query 30214 CCATGCAGCGCCCCCCATATCACAAACATCCAGCTTGCTCCATGCCATAGGCCACCAAGA 30273 ||||||||||| ||||| || ||| ||||| || || ||||| ||||| || || Sbjct 53007 CCATGCAGCGCGCCCCACGCAACGAACGTCCAGGCCGCGCCGTGCCAGAGGCCGCCGAGC 53066 Query 30274 ACAAACGTTGCCATTAGGTTGAAGTAAACTCTG---GCGGAAGAACAGCGGTTTCCACCT 30330 | | ||| ||| || |||| ||| | | | |||| | | |||||| || || Sbjct 53067 AGCATCGTCATCATCAGATTGACGTAG-CGCAGCACGCGGCCG--CGGCGGTTGCCGCCG 53123 Query 30331 AACGGGATGTAAAGGTAGTCTCGCAGATA--GCGGCTTAGGGTCATGTGCCAACGCCGCC 30388 | ||||||||| || ||||| ||||| | ||| | || ||||||||||| || |||| Sbjct 53124 AGCGGGATGTAGAGATAGTCGCGCAGGAACTGCGAC--AGCGTCATGTGCCAGCGGCGCC 53181 Query 30389 AGAAATCTTGAATATCAAG--CGCCTTGTAGGGCGAGTTGAAGTTTATTGGGAGCCAAAT 30446 |||| || || || | ||||||||||||||||||||| || | || || | || Sbjct 53182 AGAA--CTCGACGATGCTGGTCGCCTTGTAGGGCGAGTTGAAATTGACCGGCAGGAAGAT 53239 Query 30447 GTTAAAGAGAAGGGCCGCGCCTATGGCCATGTCGCAGTAACCGCTAAAGTCAAAGTATAG 30506 | || | || | || || ||||||||| | || ||| |||||| || || || Sbjct 53240 GCCGAACATCAGCGAGATTCCGATCGCCATGTCGGAATAGCCGGAAAAGTCGAAATAGAG 53299 Query 30507 TTGGAATGTGTAGG 30520 ||||||||||||| Sbjct 53300 CTGGAATGTGTAGG 53313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156678357176980