Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_030942.1 Length=55524 Score E Sequences producing significant alignments: (Bits) Value seq53501 113 2e-20 >seq53501 Length=235563 Score = 113 bits (124), Expect = 2e-20 Identities = 277/408 (68%), Gaps = 18/408 (4%) Strand=Plus/Minus Query 45202 TGGCTCACCCCGCCACACATCATCGACGCACTCGGGCCATTCGATCTCGACCCCTGCGCC 45261 ||||| || |||||| | ||||| || || ||||| ||||| || ||||| ||||| Sbjct 51338 TGGCTGACACCGCCAGAAATCATACGCGAGCTTGGGCCGTTCGACCTGGACCCGTGCGCG 51279 Query 45262 GCGCCAGAGCCTCGCCCCTGGGATACCGCGACCA-AGCACTACACGCTGCCGACTGACGG 45320 ||||||||||| || || ||| || || || | ||||| | |||| || |||||| Sbjct 51278 GCGCCAGAGCCGCGTCCGTGGCCGACAGC-ACGAGAGCACATCGCGCTTCCAGTTGACGG 51220 Query 45321 ACTCGCGGAGCCGTGGCACGGTCGGGTCTGGCTTAACCCTCCGTATTCGCGT---GAAGC 45377 | | || ||| ||| || || || ||||| ||||| || |||||| | ||| Sbjct 51219 ATTATCGAAGCGATGGGGGGGGCGAGTGTGGCTCAACCCGCCCTATTCGACTGCCGAAAT 51160 Query 45378 GGTGAAGTGGCTAGCCAGGC-TCGCCCACCACGGTCGCGGTACTGCGCTGGTCTTCGCCC 45436 ||| ||| | ||| || | || | ||||| || || |||||| | ||||| | Sbjct 51159 CAAGAAATGG-TTGCCGCGCATGGCTGAGCACGGCAATGGGACAGCGCTGATATTCGCGC 51101 Query 45437 GGACCGAGACAGCGTGGTTCGT-CGCGACAGTATGGCAACGAGCGTCGGCCGTCCTATTC 45495 |||| ||||| | | ||| | ||| || || ||| ||| | ||||| || ||| Sbjct 51100 GGACTGAGACTGACAGCTTCTTCCGCTAC-GTTTGGGGGGCCGCGACCGCCGTTCTGTTC 51042 Query 45496 CTGCATGGGCGCC-----TGCATTTTCACTACTCCGACGGAGAGCGCGCTGCGGCCAACG 45550 |||| || |||| ||||||||||||| | ||||| |||||||| | ||| Sbjct 51041 CTGC--GGTCGCCGCGGTTGCATTTTCACTATCCGGACGGTCGGCGCGCTGAGAACAATT 50984 Query 45551 CTGGCGCGCCCTCGTGCCTTGT-TGCTTACGGTACCGAGGACGCCGAC 45597 |||||| || || || | ||| || || || | | ||||||||| Sbjct 50983 GTGGCGCTCCGTC-TGTCCTGTGCGCGTATGGCAACCGCGACGCCGAC 50937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 177435561308744