Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq27440 116 5e-21 seq48397 87.8 3e-12 >seq27440 Length=426762 Score = 116 bits (128), Expect = 5e-21 Identities = 188/268 (70%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 99184 CGAAGGCGTGCCGAAGAAAGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCA 99243 ||| ||||| ||||| || || || || ||||| || || || | ||||| || || Sbjct 328864 CGACGGCGTCGAGAAGACCGATCGGACCGGCACCGGCACGCTCTCGGTATTCGGCCATCA 328923 Query 99244 GATGCGTTTCAATCTGCAAGAAGGCTTTCCGCTGGTAACGACTAAGCG-CTGTCACATGC 99302 ||||| ||||||||| ||||| ||| || | ||||| ||||| ||| | || Sbjct 328924 AATGCGCTTCAATCTGTCGACCGGCTTCCCGATGCTGACGACCAAGCGGCTGCCGT-TGA 328982 Query 99303 GTTCGATTATTCACGAACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAA 99362 |||| | || || ||||| ||||||||||| ||||| ||||| ||||||| | Sbjct 328983 AGGCGATCGTGCATGAGCTGCTCTGGTTCCTGAAGGGCGACACCAACATCAAATACCTGC 329042 Query 99363 ATGATAATGGTGTAACTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGG 99422 || || || || || || |||||||| ||| | | ||||||| ||||| |||| Sbjct 329043 GCGACAACGGCGTCACCATCTGGGACGAGTGGGCGGATGCCAATGGCGATCTCGGCCCGG 329102 Query 99423 TATACGGTAAACAGTGGCGGTCTTGGCC 99450 | || || | |||||||| || ||||| Sbjct 329103 TCTATGGCCATCAGTGGCGCTCATGGCC 329130 >seq48397 Length=242080 Score = 87.8 bits (96), Expect = 3e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 88447 GAGATAGCTCCCTTCGCCTATATGCGTGGCCGCAACTTCGAGAACGCGGTCGTTATCTTA 88506 ||||| || || |||||| ||||| ||||||| | || || || | | | ||| | Sbjct 97858 GAGATCGCGCCGCTCGCCTTCATGCGCGGCCGCACCCTCACCAATGCCGCCATCATCCTG 97917 Query 88507 GATGAAGCTCAGAACACCACTGCTCAGCAGATGAAGCTCTTCCTGACCCGTATCGGGGAG 88566 || ||||| ||||||||||| | |||||||||| | |||||||| ||| |||| ||| Sbjct 97918 GACGAAGCCCAGAACACCACATCGATGCAGATGAAGATGTTCCTGACGCGTCTCGGCGAG 97977 Query 88567 AACTGTATCGTTATCGTTAACGGTGACGTCACTCAGTGCGACTTACCTTCCGGGGTGAAG 88626 ||| | | | ||||| | ||| || | | ||| |||| | || ||| || Sbjct 97978 AACAGCCGCATGATCGTGACCGGCGATCCCTCGCAGATCGACCTGCCGAACGGCCAGACC 98037 Query 88627 TCGGGACTGGCCGACGCA 88644 ||||| ||||| || ||| Sbjct 98038 TCGGGTCTGGCGGAGGCA 98055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715955829996400