Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq27440 116 6e-21 seq54491 102 1e-16 seq53723 87.8 3e-12 >seq27440 Length=426762 Score = 116 bits (128), Expect = 6e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 202540 GAAAAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTT 202599 || |||| || || |||||||||||||||| ||| | ||||| || ||||| || Sbjct 328874 GAGAAGACCGATCGGACCGGCACCGGCACGCTCTCGGTATTCGGCCATCAAATGCGCTTC 328933 Query 202600 GACCTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATT 202659 | ||| | |||||||| || |||| || || | | | | | ||| | Sbjct 328934 AATCTGTCGACCGGCTTCCCGATGCTGACGACCAAGCGGCTGCCGTTGAAGGCGATCGTG 328993 Query 202660 CACGAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGG 202719 || |||||||| ||||||||||| || ||||||||||||| |||||| ||| ||||| Sbjct 328994 CATGAGCTGCTCTGGTTCCTGAAGGGCGACACCAACATCAAATACCTGCGCGACAACGGC 329053 Query 202720 GTCACTATCTGGGACGAATGGGCG 202743 ||||| ||||||||||| |||||| Sbjct 329054 GTCACCATCTGGGACGAGTGGGCG 329077 Score = 91.5 bits (100), Expect = 2e-13 Identities = 208/309 (67%), Gaps = 8/309 (3%) Strand=Plus/Plus Query 203290 CTATCGTGTCAGTTGTATCAGCGCAGCGCCGATGTCTTCTTAGGCGTGCCGTTTAACATC 203349 || || |||||| | ||||||||| |||||| |||||| | |||||||| || |||||| Sbjct 329300 CTGTCCTGTCAGCTCTATCAGCGCTCCGCCGACGTCTTCCTCGGCGTGCCCTTCAACATC 329359 Query 203350 GCCTCGTATGCTTTACTGACTGAGATGGTTGCTCAGCAGGTCAAC---ATGGTGGCCGAG 203406 ||||| || | | || || |||||| || |||||||| | || | ||| Sbjct 329360 GCCTCCTACTCGCTGCTCACCATGATGGTGGC---GCAGGTCACCGGTCTGAAGCCCGGC 329416 Query 203407 GAGTTCGTCTGGACAGGCGGTGATACACATCTGTATTCCAACCATCTGGAGCAGGCCCGT 203466 || ||||| | ||| || | ||||| ||||||||||| ||||||||||| Sbjct 329417 GATTTCGTGCATTCGTTCGGCGACGCGCATCTCTATTCCAACCACCTGGAGCAGGCGAAG 329476 Query 203467 CTGCAGTTAACTCGTGACCCGCACCCATTACCGCGTCTGAAATTCAAACGTAAGCCCGAG 203526 || ||| | || || | |||| | || ||| || |||| | | || | || Sbjct 329477 CTCCAGCTCACCCGCGCGCCGCGAGCGTTGCCGGTGATGCGCATCAACCCTGAGGTCAAG 329536 Query 203527 TCTATCTTCGACTACCAGTTCGAAGACTTTGAAATCGAAGGCTACGTTTCCCACGACGC- 203585 |||||| || || ||||| || || ||| ||| ||||||| | | ||| ||| Sbjct 329537 GACATCTTCTCCTTCCGCTTCGAGGATTTCGAACTCGTCGGCTACGATCCGCAC-CCGCA 329595 Query 203586 CATCAAAGC 203594 |||||| || Sbjct 329596 CATCAAGGC 329604 >seq54491 Length=272697 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 202540 GAAAAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTT 202599 ||||||| ||||| ||||||||||| || ||| ||||||| |||||||| || Sbjct 166571 GAAAAGACCGACCGCACCGGCACCGGGACCTTGTCCGTGTTCGGACATCAGATGCGCTTC 166512 Query 202600 GACCTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATT 202659 | ||| | ||||| || || | || || || ||| | | || || ||| | Sbjct 166511 AATCTGGCATCGGGCTTTCCGATGCTCACGACCAAGAAGCTGCCGCTGAAATCCATCGTA 166452 Query 202660 CACGAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGG 202719 || || ||||| ||||| || || ||||||||||||| |||||||| || |||| Sbjct 166451 CATGAACTGCTTTGGTTTCTCGCGGGCGACACCAACATCAAATACCTGAAAGACCACGGC 166392 Query 202720 GTCACTATCTGGGACGAATGGGCG 202743 ||| | |||||||| ||||||||| Sbjct 166391 GTCTCGATCTGGGATGAATGGGCG 166368 >seq53723 Length=82647 Score = 87.8 bits (96), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769 |||||||||| |||||||| | || ||||||||| || ||||||||||||||| |||| Sbjct 47101 TGTAGCTCAGTTGGTTAGAGCGTCGGCCTGTCACGCCGAAGGTCGCGGGTTCGAGCCCCG 47160 Query 2770 TCAGTCCTGCCATATCTG 2787 ||| ||| ||||| |||| Sbjct 47161 TCACTCCCGCCATTTCTG 47178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787760864332000