Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq54491 123 4e-23 seq27440 96.9 5e-15 >seq54491 Length=272697 Score = 123 bits (136), Expect = 4e-23 Identities = 179/250 (72%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 99524 CGACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGGC 99583 |||||| || ||||| || || ||||| |||| || ||||| ||||| || ||| |||| Sbjct 166563 CGACCGCACCGGCACCGGGACCTTGTCCGTGTTCGGACATCAGATGCGCTTCAATCTGGC 166504 Query 99584 TGAAGGTTTTCCTCTGGTCACTACTAAGC-GCTGTCACCTCCGTTCTATTATTCATGAAC 99642 || ||||| || |||| || ||| |||| | | | || || | ||||||| Sbjct 166503 ATCGGGCTTTCCGATGCTCACGACCAAGAAGCTGCCGC-TGAAATCCATCGTACATGAAC 166445 Query 99643 TCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTA 99702 | |||||||| || || || ||||| | | | ||||||||||| |||||||| | | Sbjct 166444 TGCTTTGGTTTCTCGCGGGCGACACCAACATCAAATACCTGAAAGACCACGGCGTCTCGA 166385 Query 99703 TCTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGC 99762 ||||| |||| |||| ||| || || || | || || || |||||| |||||||| Sbjct 166384 TCTGGGATGAATGGGCGGACGCCAATGGCGATCTCGGCCCAGTCTACGGATCGCAGTGGC 166325 Query 99763 GGTCTTGGCC 99772 | || ||||| Sbjct 166324 GCTCGTGGCC 166315 >seq27440 Length=426762 Score = 96.9 bits (106), Expect = 5e-15 Identities = 175/255 (69%), Gaps = 12/255 (5%) Strand=Plus/Plus Query 99524 CGACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGGC 99583 ||| || || ||||| || ||| | || | || || ||||||||||| || ||| || | Sbjct 328882 CGATCGGACCGGCACCGGCACGCTCTCGGTATTCGGCCATCAAATGCGCTTCAATCTGTC 328941 Query 99584 TGAAGGTTTTCCTCTGGTCACTACTAAGCG-CTGTCACCTCCGTT-----CTATTATTCA 99637 || || || || | || || ||||| ||| ||||| | || | || Sbjct 328942 GACCGGCTTCCCGATGCTGACGACCAAGCGGCTG------CCGTTGAAGGCGATCGTGCA 328995 Query 99638 TGAACTCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGT 99697 ||| || || ||||||||||| || || ||||| | | | |||||| || |||||||| Sbjct 328996 TGAGCTGCTCTGGTTCCTGAAGGGCGACACCAACATCAAATACCTGCGCGACAACGGCGT 329055 Query 99698 CACTATCTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCA 99757 ||| |||||| | ||||||| | | || || || | || ||||| || || | || Sbjct 329056 CACCATCTGGGACGAGTGGGCGGATGCCAATGGCGATCTCGGCCCGGTCTATGGCCATCA 329115 Query 99758 GTGGCGGTCTTGGCC 99772 |||||| || ||||| Sbjct 329116 GTGGCGCTCATGGCC 329130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 733754396957520