Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq27440 178 8e-40 seq54491 116 2e-21 >seq27440 Length=426762 Score = 178 bits (196), Expect = 8e-40 Identities = 355/521 (68%), Gaps = 10/521 (2%) Strand=Plus/Plus Query 836 GATCGCACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGACCTCACC 895 ||||| ||||||||||||||||| |||||| || |||| | | | || | Sbjct 328883 GATCGGACCGGCACCGGCACGCTCTCGGTATTCGGCCATCAAATGCGCTTCAATCTGTCG 328942 Query 896 GAGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAACTT 955 ||||||||| || | || || ||||| | | || || || | | | | || || Sbjct 328943 ACCGGCTTCCCGATGCTGACGACCAAGCGGCTGCCGTTGAAGGCGATCGTGCATGAGCTG 329002 Query 956 CTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTCACCATC 1015 || |||||||| | |||||||| ||| | || || ||||||||||||||||||| Sbjct 329003 CTCTGGTTCCTGAAGGGCGACACCAACATCAAATACCTGCGCGACAACGGCGTCACCATC 329062 Query 1016 TGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGGCGG 1075 |||||||||||||| || ||| || | ||||| || ||||| ||| |||||||| Sbjct 329063 TGGGACGAGTGGGCGGATGCCAATGGCGATCTCGGCCCGGTCTATGGCCATCAGTGGCGC 329122 Query 1076 CACTGGCATGTCGAGGACGGAGGATCGTCGTGGATTGACCAGATCTCGGCCGCCGTGGAG 1135 |||| | | |||||| | | || ||||||||| | || |||||| Sbjct 329123 TCATGGCCGGCCCCGGACGGCCG------CAGCATCGACCAGATCGCCAACGTCGTGGAC 329176 Query 1136 CTGCT-TCGCGAGGACCCTGACTCGCGCCGGAACGTGGTATCCGCATGGAACGTCGGTGA 1194 || | ||| | || ||||||||||| | || || || ||||| | || Sbjct 329177 ATGATCAAGCG-CAATCCGGACTCGCGCCGCCTGATCGTCTCGGCGTGGAATCCGGCCGA 329235 Query 1195 CCTCAGCGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCGTCGACGG 1254 || | | ||||| || | |||||||| | |||||||| | ||||||| | |||| Sbjct 329236 GGTCGACAAGATGGCGCTGCCGCCGTGCCATTGCCTGTTCCAGTTCTACGTCGCCAACGG 329295 Query 1255 CCGGCTCTCGCTG-CAGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCA 1313 | ||| || ||| ||| |||| |||||| ||| ||| | |||||||| ||||| |||| Sbjct 329296 CAAGCTGTC-CTGTCAGCTCTATCAGCGCTCCGCCGACGTCTTCCTCGGCGTGCCCTTCA 329354 Query 1314 ATATCGCCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAG 1354 | |||||||| ||| |||| ||| | ||| | |||||| Sbjct 329355 ACATCGCCTCCTACTCGCTGCTCACCATGATGGTGGCGCAG 329395 >seq54491 Length=272697 Score = 116 bits (128), Expect = 2e-21 Identities = 336/508 (66%), Gaps = 22/508 (4%) Strand=Plus/Minus Query 836 GATCGCACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGACCTCACC 895 || |||||||||||||| || || | |||||| ||| |||| | | | || | Sbjct 166562 GACCGCACCGGCACCGGGACCTTGTCCGTGTTCGGACATCAGATGCGCTTCAATCTGGCA 166503 Query 896 GAGGGCTTCCCGCTGGTCACCACGAAG-CGCGTCCACTTCAAATCGGTTGCGTAC--GAA 952 |||||| ||| || |||| || ||| || || | | ||||| | ||||| ||| Sbjct 166502 TCGGGCTTTCCGATGCTCACGACCAAGAAGCTGCCGC-TGAAATCCAT--CGTACATGAA 166446 Query 953 CTTCTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTCACC 1012 || || ||||| ||| |||||||| ||| | || || || ||| |||||||| | Sbjct 166445 CTGCTTTGGTTTCTCGCGGGCGACACCAACATCAAATACCTGAAAGACCACGGCGTCTCG 166386 Query 1013 ATCTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGG 1072 |||||||| || ||||| |||||| || | ||||| || |||||||| |||||||| Sbjct 166385 ATCTGGGATGAATGGGCGGACGCCAATGGCGATCTCGGCCCAGTCTACGGATCGCAGTGG 166326 Query 1073 CGGCACTGGCATGTCGAGGACGGAGGATCGTCGTGGATTGACCAGATCTCGGCCGCCGTG 1132 || |||| || |||||| | | || |||||||| || | Sbjct 166325 CGCTCGTGGCCTGCGCCGGACGGCCG------CAGCATCGACCAGATTTCAAATCTGATC 166272 Query 1133 GAGCTGCTTCGCGAGGACCCTGACTC---GCGCCGGAACGT-GGTATCCGCATGGAACGT 1188 ||| || | ||| | | || || || |||| || ||| || || ||||| Sbjct 166271 GAGATGATCCGCAAAAATCCGGATTCACGTCGCCTGATCGTCAGT----GCGTGGAATCC 166216 Query 1189 CGGTGACCTCAGCGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCGT 1248 || ||| || | | ||||| || | ||||| ||| | |||||||| | || |||| Sbjct 166215 CGCCGACGTCGACAAGATGGCGCTGCCTCCGTGTCACTGCCTGTTCCAGTTCTATGTCGC 166156 Query 1249 CGACGGCCGGCTCTCGCTG-CAGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGC 1307 |||| | || ||| || | |||||||| |||||| | || ||||| |||| Sbjct 166155 TAACGGAAAATTGTC-CTGCCAACTGTACCAGCGTTCGGCGGACGTATTTCTCGGCGTGC 166097 Query 1308 CGTTCAATATCGCCTCGTACGCGCTCCT 1335 ||||||| ||||| || || ||||| || Sbjct 166096 CGTTCAACATCGCGTCCTATGCGCTGCT 166069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 295926412504542