Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq32030 150 6e-32 seq34751 118 3e-22 >seq32030 Length=166927 Score = 150 bits (166), Expect = 6e-32 Identities = 263/374 (70%), Gaps = 14/374 (4%) Strand=Plus/Minus Query 40001 CTTGGTCAGCTTCTCGCCGACCTGGA---AGGGCTTGTCCAGCACGCGCGCCG-CGTCCT 40056 ||| || ||||| ||| |||||| ||||| | | || ||||| |||| |||| Sbjct 86194 CTTCGTGAGCTTGTCG---ACCTGGCCATAGGGCATCTGGAGGACGCG-GCCGACGTCGC 86139 Query 40057 TCATCGCGTTGCGCGCCTTGATCCGACCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCC 40116 || | | |||||||| | | ||||||||| |||||| ||||||| ||| | Sbjct 86138 GCAGCACCCCGCGCGCCTGCAGCGTACCGAAGGTGATGATCTGCGCGACCTGGTCGCGGC 86079 Query 40117 CGTACTTCTCGGTG-ACGTACCTGATCACGTCGCCCCGTCG--CCGGTCATCGAAGTCGA 40173 |||| || | || ||||| |||||||| ||||| || || || | || ||| |||| Sbjct 86078 CGTAGCGCT-GCTGCACGTAACTGATCACCTCGCCGCGGCGATCCTGGCA--GAAATCGA 86022 Query 40174 TGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40233 |||| | ||| ||||| || ||||| ||||| || ||||| |||||||| | || ||| Sbjct 86021 TGTCGAAGTCCGGCATCGAGACGCGTTCGGGATTGAGGAAGCGCTCGAACAGCAGGCCGA 85962 Query 40234 GCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCG 40293 | ||| || || ||||| |||||| || | ||||||||||| ||||| | | Sbjct 85961 ACTTGATCGGATCGAGGTCGGTGATGGTCAGCGCCCACGCGACCAGCGAGCCGGCGCCGG 85902 Query 40294 AGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGA 40353 |||| || || || ||||| | ||| | ||| ||||| ||||||||||| | Sbjct 85901 AGCCGCGGCCCGGCCCGACGGGAATGCCTTGGCTCTTTGCCCATTTGATGAAGTCGGACA 85842 Query 40354 CGACCAGGAAGTAG 40367 ||| |||||||||| Sbjct 85841 CGATCAGGAAGTAG 85828 >seq34751 Length=230815 Score = 118 bits (130), Expect = 3e-22 Identities = 201/287 (70%), Gaps = 6/287 (2%) Strand=Plus/Plus Query 40083 CCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTGATC 40142 |||||||| |||||| |||||| || ||||| ||| ||||| | |||| Sbjct 178857 CCGAAGGTGATGATCTGGCCGACCTGATCGCGGCCGTAGCGCTCCTGCACGTAGCGGATC 178916 Query 40143 ACGTCGCCCCGTCG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCT 40200 || ||||| || || || | || |||||||||||| | ||| ||||| || ||||| | Sbjct 178917 ACCTCGCCGCGCCGGTCCTGACA--GAAGTCGATGTCGAAGTCCGGCATCGAGACGCGTT 178974 Query 40201 CGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGAT-G 40259 | || || ||||| |||||||| | || ||| | |||| || || ||||| || || | Sbjct 178975 CCGGATTGAGGAAGCGCTCGAACAGCAGACCGAACCGGATCGGATCGAGGTCGGTAATGG 179034 Query 40260 CCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACACG 40319 | | || ||| || |||||||| || || |||| || || || || |||||| | | Sbjct 179035 TCAATGC-GTAAGCCACCAGCGAGCCTGCGCCCGAACCGCGGCCCGGCCCGACCGGAATG 179093 Query 40320 CCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTA 40366 || | ||| || ||||||||| | ||||| ||||||||| Sbjct 179094 CCCTCGGACTTCGCATGCTTGATGAAGTCCGAGACGATCAGGAAGTA 179140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160032895327376