Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_031080.1 Length=160985 Score E Sequences producing significant alignments: (Bits) Value seq32030 105 7e-18 seq34751 98.7 1e-15 seq54433 91.5 2e-13 >seq32030 Length=166927 Score = 105 bits (116), Expect = 7e-18 Identities = 123/163 (75%), Gaps = 5/163 (3%) Strand=Plus/Plus Query 120450 CCAAGCCGTGCCTGTGCGGGCCGGGCCGTGGATCCGCCGGAGGCTCGCTGGTCACCTACG 120509 ||||| | | || || |||||||||||| || |||| || |||||||||||| | | | Sbjct 85870 CCAAGGCATTCCCGT-CGGGCCGGGCCGCGGCTCCGGCGCCGGCTCGCTGGTCGCGTGGG 85928 Query 120510 TCATGGGCATCACCTCGATCGATCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCA 120569 || ||||||| ||||||||||||||| || |||| |||||||||||||| ||| Sbjct 85929 CGCTGACCATCACCGACCTCGATCCGATCAAGTTCGGCCTGCTGTTCGAGCGCTTCCTCA 85988 Query 120570 ACCCGGATCGC--CCCGACTTTCCCGACATCGACGTCGACTTC 120610 | || || ||| | ||| | || ||| ||||| |||| ||| Sbjct 85989 ATCCCGAACGCGTCTCGA--TGCCGGACTTCGACATCGATTTC 86029 >seq34751 Length=230815 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/147 (76%), Gaps = 4/147 (3%) Strand=Plus/Minus Query 120466 CGGGCCGGGCCGTGGATCCGCCGGAGGCTCGCTGGTCACCTACGTCATGGGCATCACCTC 120525 |||||||||||| || || | || |||||||||||| | |||| || ||| ||| Sbjct 179084 CGGGCCGGGCCGCGGTTCGGGCGCAGGCTCGCTGGTGGCTTACGCATTGACCATTACCGA 179025 Query 120526 GATCGATCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGATCGC--CCC 120583 ||||||||||| || || ||| |||||||||||||| |||| ||||| ||| | | Sbjct 179024 CCTCGATCCGATCCGGTTCGGTCTGCTGTTCGAGCGCTTCCTCAATCCGGAACGCGTCTC 178965 Query 120584 GACTTTCCCGACATCGACGTCGACTTC 120610 || | || ||| ||||| |||||||| Sbjct 178964 GA--TGCCGGACTTCGACATCGACTTC 178940 >seq54433 Length=385573 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 120505 CTACGTCATGGGCATCACCTCGATCGATCCGATCAAGTACGACCTGATGTTCGAGCGCTT 120564 |||||| | ||| |||||||| ||||||||| |||| ||| ||| ||||||||||||| Sbjct 275671 CTACGTGCTCGGCGTCACCTCGGTCGATCCGACCAAGGTCGATCTGCTGTTCGAGCGCTT 275612 Query 120565 CATCAACCCGGATCGCCCCGACTTTCCCGACATCGACGTCGACTTCCAGAAGTCG 120619 |||| | ||| || | || ||||||||||||||||| ||| || | ||| Sbjct 275611 CATCTCCAAGGAGCGGCTGGAGCCGCCCGACATCGACGTCGATTTCGAGCATTCG 275557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514658706352400