Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq54491 140 5e-28 seq27440 118 2e-21 seq28082 86.0 1e-11 seq24822 86.0 1e-11 >seq54491 Length=272697 Score = 140 bits (154), Expect = 5e-28 Identities = 180/247 (73%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 201841 AAAAG-CCGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTA 201899 ||||| ||||||| ||||| || || ||| | || || ||||||| ||||||||||| | Sbjct 166570 AAAAGACCGACCGCACCGGCACCGGGACCTTGTCCGTGTTCGGACATCAGATGCGCTTCA 166511 Query 201900 ACTTACAAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCC 201959 | | | || |||||| || |||| ||||| ||| | | || || ||| | | Sbjct 166510 ATCTGGCATCGGGCTTTCCGATGCTCACGACCAAGAAGCTGCCGCTGAAATCCATCGTAC 166451 Query 201960 ATGAGCTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACG 202019 |||| ||||| ||||| ||| ||| |||||||||||| | || |||||||| || || Sbjct 166450 ATGAACTGCTTTGGTTTCTCGCGGGCGACACCAACATCAAATACCTGAAAGACCACGGCG 166391 Query 202020 TCACCATCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGC 202079 || | |||||||| ||||||||||| || || || | ||||| || ||||| || Sbjct 166390 TCTCGATCTGGGATGAATGGGCGGACGCCAATGGCGATCTCGGCCCAGTCTACGGATCGC 166331 Query 202080 AATGGCG 202086 | ||||| Sbjct 166330 AGTGGCG 166324 >seq27440 Length=426762 Score = 118 bits (130), Expect = 2e-21 Identities = 173/242 (71%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 201846 CCGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAA-CTTA 201904 |||| || ||||| || ||||| ||||| || ||||| | || |||||||| || || Sbjct 328881 CCGATCGGACCGGCACCGGCACGCTCTCGGTATTCGGCCATCAAATGCGCTTCAATCTGT 328940 Query 201905 CAAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAG 201964 | | || || ||| || | || ||||| | | | | | ||| | |||||| Sbjct 328941 CGACC-GGCTTCCCGATGCTGACGACCAAGCGGCTGCCGTTGAAGGCGATCGTGCATGAG 328999 Query 201965 CTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACC 202024 ||||| |||||||| | ||| |||||||||||| | || || |||||| ||||||| Sbjct 329000 CTGCTCTGGTTCCTGAAGGGCGACACCAACATCAAATACCTGCGCGACAACGGCGTCACC 329059 Query 202025 ATCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGG 202084 ||||||||||| ||||||||| || || || | |||||||| || || | || ||| Sbjct 329060 ATCTGGGACGAGTGGGCGGATGCCAATGGCGATCTCGGCCCGGTCTATGGCCATCAGTGG 329119 Query 202085 CG 202086 || Sbjct 329120 CG 329121 >seq28082 Length=2048 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 4030 CTCGTAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCT 4089 || |||||||||||||||||||||| ||| ||||||||| |||||||| ||||||||||| Sbjct 279 CTTGTAGCTCAGTTGGTTAGAGCGCGCGCTTGATAAGCGTGAGGTCGGAAGTTCAAGTCT 338 >seq24822 Length=2082 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 4030 CTCGTAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCT 4089 || |||||||||||||||||||||| ||| ||||||||| |||||||| ||||||||||| Sbjct 251 CTTGTAGCTCAGTTGGTTAGAGCGCGCGCTTGATAAGCGTGAGGTCGGAAGTTCAAGTCT 310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787444289030320