Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_031112.1 Length=59265 Score E Sequences producing significant alignments: (Bits) Value seq53501 86.0 2e-12 >seq53501 Length=235563 Score = 86.0 bits (94), Expect = 2e-12 Identities = 192/280 (69%), Gaps = 15/280 (5%) Strand=Plus/Minus Query 48675 CGCGCTCGGGCCGTTCGACCTCGACCCGTGCGCGGCACCCGACCCCGCACGGTGGCCGAC 48734 || ||| |||||||||||||| |||||||||||||| || || || | ||||||||| Sbjct 51312 CGAGCTTGGGCCGTTCGACCTGGACCCGTGCGCGGCGCCAGAGCCGCGTCCGTGGCCGAC 51253 Query 48735 CGCCCACGAGCACCT-GACCTACCGAGACGACGGGCTGTCG-CGC-ATGTGGCACGGCCG 48791 || | |||||| | | || || || ||||| | ||| || ||| || || || Sbjct 51252 AGCACGAGAGCACATCGCGCTTCC-AGTTGACGGATTATCGAAGCGATGGGG--GGGGCG 51196 Query 48792 GGTGTGGCTGAACCCGCCGTACTCG-CAGGCG-----TGGAAGTGGGTGCAGCGCCTCGC 48845 |||||||| |||||||| || ||| | | || ||| ||| ||| |||| | || Sbjct 51195 AGTGTGGCTCAACCCGCCCTATTCGACTGCCGAAATCAAGAAATGGTTGCCGCGCATGGC 51136 Query 48846 CGGTCACTCGGGCGGCGGCACCGCGCTGCTGTTCGCGCGCACCGAAACCGCAATGTTCAG 48905 | ||| ||| || || |||||| | |||||||| || || || | | ||| Sbjct 51135 TGAGCAC---GGCAATGGGACAGCGCTGATATTCGCGCGGACTGAGACTGACAGCTTCTT 51079 Query 48906 CCGGTGGGTGTGGGAACGCGCCGACGCCGTGCTGTTCCTG 48945 ||| | || |||| ||| |||||| ||||||||| Sbjct 51078 CCGCTACGTTTGGGGGGCCGCGACCGCCGTTCTGTTCCTG 51039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189398694979508