Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq54491 98.7 2e-15 seq27440 96.9 5e-15 >seq54491 Length=272697 Score = 98.7 bits (108), Expect = 2e-15 Identities = 174/253 (69%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 200041 ATGAACCAGTATCTCATCCTCCTAAATCAAGTCCGTCGCGACGGGCATGTAAAGAAAGAC 200100 ||||||||||||| | ||| || | | | | | ||||||| | ||||| ||| Sbjct 166619 ATGAACCAGTATCACGACCTGCTCGAGCGAATTCTCAGCGACGGCGCGGAAAAGACCGAC 166560 Query 200101 CGTACCGGTANNNNNACCACGTCTATTTTCGGTGCACAGATGCGCTTCAATCTACAAGAC 200160 || ||||| | ||| ||| | ||||| ||||||||||||||||| | Sbjct 166559 CGCACCGGCACCGGGACCTTGTCCGTGTTCGGACATCAGATGCGCTTCAATCTGGCATCG 166500 Query 200161 GGCTTCCCATTGGTGACGACCAAGAAG-TGCCATCTCCGTTCCATCATTCACGAGCTGTT 200219 ||||| || || | |||||||||||| |||| || |||||| | || || ||| | Sbjct 166499 GGCTTTCCGATGCTCACGACCAAGAAGCTGCC-GCTGAAATCCATCGTACATGAACTGCT 166441 Query 200220 GTGGTTCCTTAACGGTGACACCAATATCAAGTATCTGAACGATAACAATGTCACCATTTG 200279 ||||| || || |||||||| ||||| || ||||| || || ||| | || || Sbjct 166440 TTGGTTTCTCGCGGGCGACACCAACATCAAATACCTGAAAGACCACGGCGTCTCGATCTG 166381 Query 200280 GGACGAATGGGCG 200292 ||| ||||||||| Sbjct 166380 GGATGAATGGGCG 166368 >seq27440 Length=426762 Score = 96.9 bits (106), Expect = 5e-15 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 200137 CAGATGCGCTTCAATCTACAAGACGGCTTCCCATTGGTGACGACCAAGAAG-TGCCATCT 200195 || |||||||||||||| ||||||||| || ||||||||||| | |||| | | Sbjct 328922 CAAATGCGCTTCAATCTGTCGACCGGCTTCCCGATGCTGACGACCAAGCGGCTGCCGT-T 328980 Query 200196 CCGTTCCATCATTCACGAGCTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCT 200255 | ||| | || |||||| | |||||||| || || |||||||| ||||| || || Sbjct 328981 GAAGGCGATCGTGCATGAGCTGCTCTGGTTCCTGAAGGGCGACACCAACATCAAATACCT 329040 Query 200256 GAACGATAACAATGTCACCATTTGGGACGAATGGGCG 200292 | ||| ||| |||||||| |||||||| |||||| Sbjct 329041 GCGCGACAACGGCGTCACCATCTGGGACGAGTGGGCG 329077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 782804382336000