Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq54491 159 5e-34 seq27440 147 3e-30 >seq54491 Length=272697 Score = 159 bits (176), Expect = 5e-34 Identities = 181/240 (75%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 ||||| |||||||| || ||| | || | ||||| |||||||||| || | ||| || Sbjct 166562 GACCGCACCGGCACCGGGACCTTGTCCGTGTTCGGACATCAGATGCGCTTCAATCTG-GC 166504 Query 196131 AAAGGG-TTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACT 196189 | ||| || ||| || |||| ||||| ||| ||| ||| ||| ||| | || ||||| Sbjct 166503 ATCGGGCTTTCCGATGCTCACGACCAAGAAGCTGCCGCTGAAATCCATCGTACATGAACT 166444 Query 196190 GTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTAT 196249 | | ||||| || ||||||||||||||| | || ||||||||| || |||| || Sbjct 166443 GCTTTGGTTTCTCGCGGGCGACACCAACATCAAATACCTGAAAGACCACGGCGTCTCGAT 166384 Query 196250 CTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 ||||||||| ||||| || | |||||||||| ||||| |||||||| ||||||||| Sbjct 166383 CTGGGATGAATGGGCGGACGCCAATGGCGATCTCGGCCCAGTCTACGGATCGCAGTGGCG 166324 Score = 84.2 bits (92), Expect = 3e-11 Identities = 132/188 (70%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 196750 TGTCCTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATCG 196809 ||||||| || || |||||||| || ||||| || ||||| || ||||||||||||| Sbjct 166144 TGTCCTGCCAACTGTACCAGCGTTCGGCGGACGTATTTCTCGGCGTGCCGTTCAACATCG 166085 Query 196810 CTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAAT---ATGGTGGCGGGTG 196866 | || || || ||| || |||||||| |||||| | | || | | || | Sbjct 166084 CGTCCTATGCGCTGCTGACCATGATGGTGGC---GCAGGTGACTGGGCTGAAGCCCGGCG 166028 Query 196867 ATTTCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGCCACGT 196926 | ||||| || ||||||| | ||||| || || |||||||| || |||||| | Sbjct 166027 ACTTCGTGCATTCGCTCGGCGATGCGCATCTCTATTCGAACCATCTCGATCAGGCCCGGC 165968 Query 196927 TGCAGCTC 196934 |||| ||| Sbjct 165967 TGCAACTC 165960 >seq27440 Length=426762 Score = 147 bits (162), Expect = 3e-30 Identities = 186/256 (73%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 196061 CGAGAAAGCTGACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTT 196120 |||||| | || || |||||||| ||||| |||| | ||||| |||| ||||| || Sbjct 328873 CGAGAAGACCGATCGGACCGGCACCGGCACGCTCTCGGTATTCGGCCATCAAATGCGCTT 328932 Query 196121 TGACCTGCGCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCAT 196180 | ||| | || |||||| || | || ||||| | ||| || | ||| | Sbjct 328933 CAATCTGTCGACCGGCTTCCCGATGCTGACGACCAAGCGGCTGCCGTTGAAGGCGATCGT 328992 Query 196181 CCACGAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAA 196240 || || ||| | ||||||||||| ||||||||||||||| | || ||| |||||| Sbjct 328993 GCATGAGCTGCTCTGGTTCCTGAAGGGCGACACCAACATCAAATACCTGCGCGACAACGG 329052 Query 196241 CGTCAGTATCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAA 196300 ||||| |||||||| |||||||| |||| |||||||||| ||||| ||||| || | Sbjct 329053 CGTCACCATCTGGGACGAGTGGGCGGATGCCAATGGCGATCTCGGCCCGGTCTATGGCCA 329112 Query 196301 GCAGTGGCGTGCATGG 196316 |||||||| ||||| Sbjct 329113 TCAGTGGCGCTCATGG 329128 Score = 105 bits (116), Expect = 1e-17 Identities = 148/206 (72%), Gaps = 14/206 (7%) Strand=Plus/Plus Query 196749 CTGTCCTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATC 196808 |||||||||||||| || |||||| || |||||||||||||| || || ||||||||| Sbjct 329300 CTGTCCTGTCAGCTCTATCAGCGCTCCGCCGACGTCTTCCTCGGCGTGCCCTTCAACATC 329359 Query 196809 GCTTCGTACGCTCTGTTGGTTCAC----ATGGTGGCACAGCAGGTCA---ATATGGTGGC 196861 || || ||| | || | |||| |||||||| |||||||| | || | | Sbjct 329360 GCCTCCTACTCGCT----GCTCACCATGATGGTGGC---GCAGGTCACCGGTCTGAAGCC 329412 Query 196862 GGGTGATTTCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGC 196921 || |||||||| || |||||| | ||||| || || ||||| ||||| ||||| Sbjct 329413 CGGCGATTTCGTGCATTCGTTCGGCGACGCGCATCTCTATTCCAACCACCTGGAGCAGGC 329472 Query 196922 CACGTTGCAGCTCTCCCGTGTACCGC 196947 | | | |||||| |||| | |||| Sbjct 329473 GAAGCTCCAGCTCACCCGCGCGCCGC 329498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769760840360720