Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq34751 86.0 8e-12 seq47259 82.4 9e-11 >seq34751 Length=230815 Score = 86.0 bits (94), Expect = 8e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 19832 GTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAAGTAATTCGTGGAGGTTCA 19891 ||||||||| ||||||||||||||||||||||||||||||| | || | |||| ||||| Sbjct 225578 GTGGCGGAACTGGTAGACGCGCTGGGTTTAGGTTCCAGTGACGAAAGTTGTGGGGGTTCG 225519 Query 19892 AGTCC 19896 ||||| Sbjct 225518 AGTCC 225514 >seq47259 Length=37638 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 19832 GTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAAGTAATTCGTGGAGGTTCA 19891 ||||||||| ||||||||||||||| ||||||||||||||| | || | |||| ||||| Sbjct 5024 GTGGCGGAACTGGTAGACGCGCTGGATTTAGGTTCCAGTGACGAAAGTTGTGGGGGTTCG 5083 Query 19892 AGTCC 19896 ||||| Sbjct 5084 AGTCC 5088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621629181017040