Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_031253.1 Length=77832 Score E Sequences producing significant alignments: (Bits) Value seq36931 86.0 3e-12 >seq36931 Length=650932 Score = 86.0 bits (94), Expect = 3e-12 Identities = 79/99 (80%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 52652 ATGCATCCCGAGTGGGCGCGGTCGCTTCGTGACCAGTGCGCCGCGGCCAAGGTGCCGTTC 52711 ||||||||||| |||||||| ||||| || || ||||| ||| ||||| ||||||||| Sbjct 421966 ATGCATCCCGATTGGGCGCGATCGCTGCGCGATCAGTGTCACGCCGCCAACGTGCCGTTC 422025 Query 52712 CTGTTCAAGCAGTGGGGCAACTGGAGTCCCGTTGCCCCC 52750 | |||||||| |||||| | ||| | ||| | | |||| Sbjct 422026 TTCTTCAAGCAATGGGGCGAGTGG-GCCCCCTCGACCCC 422063 Score = 82.4 bits (90), Expect = 4e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 52216 GCCGCGCCTGGTGTTCGTCAAC-AGCATGGCCGACCTGTTCCACCAGGCGGTCCCCGATG 52274 ||||||| ||||||||||| | ||||| ||| || ||||| || || || || | Sbjct 421386 GCCGCGCATGGTGTTCGTCTGCGCCCATGG-CGATCTCTTCCATGAGAACGTGCCAGACG 421444 Query 52275 ACTACATCGCCCGGGTGTTCGCCGTCATGGCCCAAGCGCCACAGCACACGTTCCAGCTGC 52334 || |||| ||| || ||||| || ||||| | || || ||||| ||||| ||| ||| Sbjct 421445 CCTGGATCGACCGCGTCTTCGCGGTGATGGCGCTGGCACCGCAGCATACGTTTCAGGTGC 421504 Query 52335 TGACCAAGCGTCACGCGCGGATGCGGC 52361 |||| |||||| || ||||||||| Sbjct 421505 TGACGAAGCGTGCAGCAAGGATGCGGC 421531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 248765448914166