Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq203116 129 6e-25 seq202680 129 6e-25 seq202679 129 6e-25 seq198733 129 6e-25 >seq203116 Length=2194 Score = 129 bits (142), Expect = 6e-25 Identities = 370/565 (65%), Gaps = 13/565 (2%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||||| || | ||||| || | |||||| | |||||| || | Sbjct 454 AGGCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCG 513 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | |||||||| || || ||||| | ||| || || | | ||| || || ||| Sbjct 514 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAG 573 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG------TCT 17134 || || |||||||||| || || ||| | || |||||| | ||| || || Sbjct 574 AAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCC 633 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 ||||| ||||| ||| | |||| ||||| || | ||| | | || || || Sbjct 634 TTGTTG---ATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCG 690 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||||| || | || || || ||| | | || || ||||| || || Sbjct 691 ATGGCGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGC 750 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 |||||| |||||||| |||||||| ||||| || ||||| ||||| ||||| || || Sbjct 751 GAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCC 810 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | | || || ||| ||| || | || ||||| ||| ||||||||||||| Sbjct 811 TCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCG 870 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || || ||||| || ||||| | ||||| ||||| | | |||| || ||| || || Sbjct 871 CTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGT-TGAGCG 928 Query 17435 --CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 ||||| ||| | || | | ||| ||||| |||| ||||| || ||| Sbjct 929 ATTCCCAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCT 988 Query 17493 CTGCCTTTTTATACATATTCCAAAT 17517 | ||||| || ||||| | ||| || Sbjct 989 CGGCCTTCTTGTACATCTCCCAGAT 1013 >seq202680 Length=3004 Score = 129 bits (142), Expect = 6e-25 Identities = 370/565 (65%), Gaps = 13/565 (2%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||||| || | ||||| || | |||||| | |||||| || | Sbjct 2087 AGGCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCG 2146 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | |||||||| || || ||||| | ||| || || | | ||| || || ||| Sbjct 2147 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAG 2206 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG------TCT 17134 || || |||||||||| || || ||| | || |||||| | ||| || || Sbjct 2207 AAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCC 2266 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 ||||| ||||| ||| | |||| ||||| || | ||| | | || || || Sbjct 2267 TTGTTG---ATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCG 2323 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||||| || | || || || ||| | | || || ||||| || || Sbjct 2324 ATGGCGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGC 2383 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 |||||| |||||||| |||||||| ||||| || ||||| ||||| ||||| || || Sbjct 2384 GAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCC 2443 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | | || || ||| ||| || | || ||||| ||| ||||||||||||| Sbjct 2444 TCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCG 2503 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || || ||||| || ||||| | ||||| ||||| | | |||| || ||| || || Sbjct 2504 CTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGT-TGAGCG 2561 Query 17435 --CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 ||||| ||| | || | | ||| ||||| |||| ||||| || ||| Sbjct 2562 ATTCCCAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCT 2621 Query 17493 CTGCCTTTTTATACATATTCCAAAT 17517 | ||||| || ||||| | ||| || Sbjct 2622 CGGCCTTCTTGTACATCTCCCAGAT 2646 >seq202679 Length=2935 Score = 129 bits (142), Expect = 6e-25 Identities = 370/565 (65%), Gaps = 13/565 (2%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||||| || | ||||| || | |||||| | |||||| || | Sbjct 2018 AGGCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCG 2077 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | |||||||| || || ||||| | ||| || || | | ||| || || ||| Sbjct 2078 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAG 2137 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG------TCT 17134 || || |||||||||| || || ||| | || |||||| | ||| || || Sbjct 2138 AAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCC 2197 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 ||||| ||||| ||| | |||| ||||| || | ||| | | || || || Sbjct 2198 TTGTTG---ATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCG 2254 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||||| || | || || || ||| | | || || ||||| || || Sbjct 2255 ATGGCGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGC 2314 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 |||||| |||||||| |||||||| ||||| || ||||| ||||| ||||| || || Sbjct 2315 GAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCC 2374 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | | || || ||| ||| || | || ||||| ||| ||||||||||||| Sbjct 2375 TCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCG 2434 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || || ||||| || ||||| | ||||| ||||| | | |||| || ||| || || Sbjct 2435 CTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGT-TGAGCG 2492 Query 17435 --CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 ||||| ||| | || | | ||| ||||| |||| ||||| || ||| Sbjct 2493 ATTCCCAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCT 2552 Query 17493 CTGCCTTTTTATACATATTCCAAAT 17517 | ||||| || ||||| | ||| || Sbjct 2553 CGGCCTTCTTGTACATCTCCCAGAT 2577 >seq198733 Length=2163 Score = 129 bits (142), Expect = 6e-25 Identities = 370/565 (65%), Gaps = 13/565 (2%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||||| || | ||||| || | |||||| | |||||| || | Sbjct 1710 AGGCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCG 1651 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | |||||||| || || ||||| | ||| || || | | ||| || || ||| Sbjct 1650 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAG 1591 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG------TCT 17134 || || |||||||||| || || ||| | || |||||| | ||| || || Sbjct 1590 AAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCC 1531 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 ||||| ||||| ||| | |||| ||||| || | ||| | | || || || Sbjct 1530 TTGTTG---ATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCG 1474 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||||| || | || || || ||| | | || || ||||| || || Sbjct 1473 ATGGCGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGC 1414 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 |||||| |||||||| |||||||| ||||| || ||||| ||||| ||||| || || Sbjct 1413 GAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCC 1354 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | | || || ||| ||| || | || ||||| ||| ||||||||||||| Sbjct 1353 TCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCG 1294 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || || ||||| || ||||| | ||||| ||||| | | |||| || ||| || || Sbjct 1293 CTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGT-TGAGCG 1236 Query 17435 --CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 ||||| ||| | || | | ||| ||||| |||| ||||| || ||| Sbjct 1235 ATTCCCAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCT 1176 Query 17493 CTGCCTTTTTATACATATTCCAAAT 17517 | ||||| || ||||| | ||| || Sbjct 1175 CGGCCTTCTTGTACATCTCCCAGAT 1151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516095586023160