Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq203874 87.8 2e-12 seq191119 87.8 2e-12 seq189946 87.8 2e-12 seq179504 87.8 2e-12 >seq203874 Length=1337 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 151013 TCTTCATGGGCCCCATCTACTACCTGCGGCTGCGGCACCTCACGCAGGACAAGG-CCACG 151071 ||||||| || |||| |||||||| | ||||| |||| | | | |||||| |||| Sbjct 316 TCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGACAAGATCCACT 375 Query 151072 -GTGCGCTGCCGCGGCAAGAAGACCAAGCTGATCCGGCAGGCCAACGAGGGCCGCAAGCG 151130 | ||||| |||||| | | | || | ||||| || |||||||| ||| Sbjct 376 CGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGGGCCGATCGCG 433 Query 151131 AGGCGGCGGCATCAAGTTCGGCGAGATGGAGCGCGACTGCCTCATCGCGCACGGCGCGGC 151190 | ||| || ||| |||||| |||||||||||||||||| | ||| | ||||||||||| Sbjct 434 CGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCGGC 493 Query 151191 C 151191 | Sbjct 494 C 494 >seq191119 Length=1049 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 151013 TCTTCATGGGCCCCATCTACTACCTGCGGCTGCGGCACCTCACGCAGGACAAGG-CCACG 151071 ||||||| || |||| |||||||| | ||||| |||| | | | |||||| |||| Sbjct 712 TCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGACAAGATCCACT 771 Query 151072 -GTGCGCTGCCGCGGCAAGAAGACCAAGCTGATCCGGCAGGCCAACGAGGGCCGCAAGCG 151130 | ||||| |||||| | | | || | ||||| || |||||||| ||| Sbjct 772 CGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGGGCCGATCGCG 829 Query 151131 AGGCGGCGGCATCAAGTTCGGCGAGATGGAGCGCGACTGCCTCATCGCGCACGGCGCGGC 151190 | ||| || ||| |||||| |||||||||||||||||| | ||| | ||||||||||| Sbjct 830 CGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCGGC 889 Query 151191 C 151191 | Sbjct 890 C 890 >seq189946 Length=1293 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 151013 TCTTCATGGGCCCCATCTACTACCTGCGGCTGCGGCACCTCACGCAGGACAAGG-CCACG 151071 ||||||| || |||| |||||||| | ||||| |||| | | | |||||| |||| Sbjct 956 TCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGACAAGATCCACT 1015 Query 151072 -GTGCGCTGCCGCGGCAAGAAGACCAAGCTGATCCGGCAGGCCAACGAGGGCCGCAAGCG 151130 | ||||| |||||| | | | || | ||||| || |||||||| ||| Sbjct 1016 CGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGGGCCGATCGCG 1073 Query 151131 AGGCGGCGGCATCAAGTTCGGCGAGATGGAGCGCGACTGCCTCATCGCGCACGGCGCGGC 151190 | ||| || ||| |||||| |||||||||||||||||| | ||| | ||||||||||| Sbjct 1074 CGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCGGC 1133 Query 151191 C 151191 | Sbjct 1134 C 1134 >seq179504 Length=801 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 151013 TCTTCATGGGCCCCATCTACTACCTGCGGCTGCGGCACCTCACGCAGGACAAGG-CCACG 151071 ||||||| || |||| |||||||| | ||||| |||| | | | |||||| |||| Sbjct 464 TCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGACAAGATCCACT 523 Query 151072 -GTGCGCTGCCGCGGCAAGAAGACCAAGCTGATCCGGCAGGCCAACGAGGGCCGCAAGCG 151130 | ||||| |||||| | | | || | ||||| || |||||||| ||| Sbjct 524 CGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGGGCCGATCGCG 581 Query 151131 AGGCGGCGGCATCAAGTTCGGCGAGATGGAGCGCGACTGCCTCATCGCGCACGGCGCGGC 151190 | ||| || ||| |||||| |||||||||||||||||| | ||| | ||||||||||| Sbjct 582 CGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCGGC 641 Query 151191 C 151191 | Sbjct 642 C 642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607091126395480