Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq203116 147 3e-30 seq202680 147 3e-30 seq202679 147 3e-30 seq198733 147 3e-30 >seq203116 Length=2194 Score = 147 bits (162), Expect = 3e-30 Identities = 392/591 (66%), Gaps = 10/591 (2%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| |||||||| || ||||| || | || || | |||||| || | ||| Sbjct 457 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 516 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| ||||| ||||| || ||||| || ||||| ||| ||||| |||||| Sbjct 517 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAG 576 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT-G 33757 || || || || || || || | | || | ||| | | || ||| || | | Sbjct 577 ATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTG 636 Query 33758 T--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815 | |||||||| ||||| ||||||||||| || ||| | |||| || || ||||| Sbjct 637 TTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGCG 696 Query 33816 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875 ||||| || || || || || || || || ||||| | || ||| Sbjct 697 CGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTAC 756 Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33935 || || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 757 ATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGGC 816 Query 33936 ATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 | |||||| || | || || | || | ||| || ||| || || || || || Sbjct 817 ACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGCC 876 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCA 34054 || || || ||||| || || || || || | | ||||| | |||| || | ||| Sbjct 877 GCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCCA 935 Query 34055 ATCATTGATATCTTTAGAT-ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | || || || || | | ||| ||||| || | ||||| || || ||||| |||| Sbjct 936 GTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCT 994 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 34164 | || ||||| | ||||||| || | |||| ||||| | || |||| Sbjct 995 TCTTGTACATCTCCCAGATGCGCTGGTGGCGGATGGGGAACAGCACGAATC 1045 >seq202680 Length=3004 Score = 147 bits (162), Expect = 3e-30 Identities = 392/591 (66%), Gaps = 10/591 (2%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| |||||||| || ||||| || | || || | |||||| || | ||| Sbjct 2090 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 2149 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| ||||| ||||| || ||||| || ||||| ||| ||||| |||||| Sbjct 2150 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAG 2209 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT-G 33757 || || || || || || || | | || | ||| | | || ||| || | | Sbjct 2210 ATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTG 2269 Query 33758 T--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815 | |||||||| ||||| ||||||||||| || ||| | |||| || || ||||| Sbjct 2270 TTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGCG 2329 Query 33816 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875 ||||| || || || || || || || || ||||| | || ||| Sbjct 2330 CGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTAC 2389 Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33935 || || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 2390 ATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGGC 2449 Query 33936 ATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 | |||||| || | || || | || | ||| || ||| || || || || || Sbjct 2450 ACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGCC 2509 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCA 34054 || || || ||||| || || || || || | | ||||| | |||| || | ||| Sbjct 2510 GCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCCA 2568 Query 34055 ATCATTGATATCTTTAGAT-ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | || || || || | | ||| ||||| || | ||||| || || ||||| |||| Sbjct 2569 GTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCT 2627 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 34164 | || ||||| | ||||||| || | |||| ||||| | || |||| Sbjct 2628 TCTTGTACATCTCCCAGATGCGCTGGTGGCGGATGGGGAACAGCACGAATC 2678 >seq202679 Length=2935 Score = 147 bits (162), Expect = 3e-30 Identities = 392/591 (66%), Gaps = 10/591 (2%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| |||||||| || ||||| || | || || | |||||| || | ||| Sbjct 2021 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 2080 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| ||||| ||||| || ||||| || ||||| ||| ||||| |||||| Sbjct 2081 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAG 2140 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT-G 33757 || || || || || || || | | || | ||| | | || ||| || | | Sbjct 2141 ATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTG 2200 Query 33758 T--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815 | |||||||| ||||| ||||||||||| || ||| | |||| || || ||||| Sbjct 2201 TTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGCG 2260 Query 33816 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875 ||||| || || || || || || || || ||||| | || ||| Sbjct 2261 CGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTAC 2320 Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33935 || || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 2321 ATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGGC 2380 Query 33936 ATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 | |||||| || | || || | || | ||| || ||| || || || || || Sbjct 2381 ACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGCC 2440 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCA 34054 || || || ||||| || || || || || | | ||||| | |||| || | ||| Sbjct 2441 GCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCCA 2499 Query 34055 ATCATTGATATCTTTAGAT-ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | || || || || | | ||| ||||| || | ||||| || || ||||| |||| Sbjct 2500 GTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCT 2558 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 34164 | || ||||| | ||||||| || | |||| ||||| | || |||| Sbjct 2559 TCTTGTACATCTCCCAGATGCGCTGGTGGCGGATGGGGAACAGCACGAATC 2609 >seq198733 Length=2163 Score = 147 bits (162), Expect = 3e-30 Identities = 392/591 (66%), Gaps = 10/591 (2%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| |||||||| || ||||| || | || || | |||||| || | ||| Sbjct 1707 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 1648 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| ||||| ||||| || ||||| || ||||| ||| ||||| |||||| Sbjct 1647 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAG 1588 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT-G 33757 || || || || || || || | | || | ||| | | || ||| || | | Sbjct 1587 ATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTG 1528 Query 33758 T--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815 | |||||||| ||||| ||||||||||| || ||| | |||| || || ||||| Sbjct 1527 TTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGCG 1468 Query 33816 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875 ||||| || || || || || || || || ||||| | || ||| Sbjct 1467 CGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTAC 1408 Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33935 || || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 1407 ATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGGC 1348 Query 33936 ATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 | |||||| || | || || | || | ||| || ||| || || || || || Sbjct 1347 ACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGCC 1288 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCA 34054 || || || ||||| || || || || || | | ||||| | |||| || | ||| Sbjct 1287 GCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCCA 1229 Query 34055 ATCATTGATATCTTTAGAT-ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | || || || || | | ||| ||||| || | ||||| || || ||||| |||| Sbjct 1228 GTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCT 1170 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 34164 | || ||||| | ||||||| || | |||| ||||| | || |||| Sbjct 1169 TCTTGTACATCTCCCAGATGCGCTGGTGGCGGATGGGGAACAGCACGAATC 1119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628053032157360