Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_003521.1 Length=241087 Score E Sequences producing significant alignments: (Bits) Value seq220101 89.7 8e-13 seq194914 89.7 8e-13 >seq220101 Length=2090 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 77351 CGCCGGGCACCAGCAGGGTGGAGTAGCACAGGTTGTGGGCCATGATGATGGAGGGGTAGA 77410 ||||||| | || || ||||||||||| ||||||||||| || |||||||||||||| | Sbjct 32 CGCCGGGAGCGAGAAGCGTGGAGTAGCAGAGGTTGTGGGCAATCATGATGGAGGGGTACA 91 Query 77411 GGCTGGCGAAGTCGAAGACCGCCACGGGGTCGTTGTAGTAGCCCACCACGGGCTCGAAGA 77470 | |||||| |||| | || | ||| ||| ||||||| || | ||| | | | Sbjct 92 GCGAGGCGAAATCGAGGGTGGCGATGGGCACGTCGTAGTAGGCCGTCTTGGGGGCAATCA 151 Query 77471 CGGTGGCACCCTGGTAG 77487 || |||| |||| |||| Sbjct 152 CGATGGCGCCCTTGTAG 168 >seq194914 Length=947 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 77351 CGCCGGGCACCAGCAGGGTGGAGTAGCACAGGTTGTGGGCCATGATGATGGAGGGGTAGA 77410 ||||||| | || || ||||||||||| ||||||||||| || |||||||||||||| | Sbjct 390 CGCCGGGAGCGAGAAGCGTGGAGTAGCAGAGGTTGTGGGCAATCATGATGGAGGGGTACA 449 Query 77411 GGCTGGCGAAGTCGAAGACCGCCACGGGGTCGTTGTAGTAGCCCACCACGGGCTCGAAGA 77470 | |||||| |||| | || | ||| ||| ||||||| || | ||| | | | Sbjct 450 GCGAGGCGAAATCGAGGGTGGCGATGGGCACGTCGTAGTAGGCCGTCTTGGGGGCAATCA 509 Query 77471 CGGTGGCACCCTGGTAG 77487 || |||| |||| |||| Sbjct 510 CGATGGCGCCCTTGTAG 526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769189297942440