Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq203116 147 3e-30 seq202680 147 3e-30 seq202679 147 3e-30 seq198733 147 3e-30 >seq203116 Length=2194 Score = 147 bits (162), Expect = 3e-30 Identities = 375/560 (67%), Gaps = 12/560 (2%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 457 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 516 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 |||||||| ||||| ||||| || ||||| || || || ||| | | | || || ||||| Sbjct 517 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 575 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCAT- 42239 ||| || || || || || || | | || | ||| | | || | | || | Sbjct 576 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 635 Query 42240 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 || |||||||| ||||| ||||||||||| || ||| | |||| || || ||||| Sbjct 636 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 695 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 ||||| || || || || || || || || ||||| | || || Sbjct 696 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 755 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 ||| || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 756 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 815 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 ||||| || || | || || | || | ||| ||| ||| || ||||| || || Sbjct 816 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 875 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATT-CC 42536 || || || ||||| || || || || || | | |||| || |||| | ||| || Sbjct 876 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGTTGAGCGATTCCC 934 Query 42537 AATCATTGATATCTTTAGAT-ATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 | | || || || || | | ||| ||||| || ||||||| || || || || ||| Sbjct 935 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 993 Query 42596 TTTTTATACATATTCCAGAT 42615 || || ||||| | |||||| Sbjct 994 TTCTTGTACATCTCCCAGAT 1013 >seq202680 Length=3004 Score = 147 bits (162), Expect = 3e-30 Identities = 375/560 (67%), Gaps = 12/560 (2%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 2090 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 2149 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 |||||||| ||||| ||||| || ||||| || || || ||| | | | || || ||||| Sbjct 2150 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 2208 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCAT- 42239 ||| || || || || || || | | || | ||| | | || | | || | Sbjct 2209 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 2268 Query 42240 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 || |||||||| ||||| ||||||||||| || ||| | |||| || || ||||| Sbjct 2269 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 2328 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 ||||| || || || || || || || || ||||| | || || Sbjct 2329 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 2388 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 ||| || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 2389 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 2448 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 ||||| || || | || || | || | ||| ||| ||| || ||||| || || Sbjct 2449 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 2508 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATT-CC 42536 || || || ||||| || || || || || | | |||| || |||| | ||| || Sbjct 2509 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGTTGAGCGATTCCC 2567 Query 42537 AATCATTGATATCTTTAGAT-ATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 | | || || || || | | ||| ||||| || ||||||| || || || || ||| Sbjct 2568 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 2626 Query 42596 TTTTTATACATATTCCAGAT 42615 || || ||||| | |||||| Sbjct 2627 TTCTTGTACATCTCCCAGAT 2646 >seq202679 Length=2935 Score = 147 bits (162), Expect = 3e-30 Identities = 375/560 (67%), Gaps = 12/560 (2%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 2021 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 2080 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 |||||||| ||||| ||||| || ||||| || || || ||| | | | || || ||||| Sbjct 2081 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 2139 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCAT- 42239 ||| || || || || || || | | || | ||| | | || | | || | Sbjct 2140 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 2199 Query 42240 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 || |||||||| ||||| ||||||||||| || ||| | |||| || || ||||| Sbjct 2200 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 2259 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 ||||| || || || || || || || || ||||| | || || Sbjct 2260 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 2319 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 ||| || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 2320 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 2379 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 ||||| || || | || || | || | ||| ||| ||| || ||||| || || Sbjct 2380 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 2439 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATT-CC 42536 || || || ||||| || || || || || | | |||| || |||| | ||| || Sbjct 2440 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGTTGAGCGATTCCC 2498 Query 42537 AATCATTGATATCTTTAGAT-ATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 | | || || || || | | ||| ||||| || ||||||| || || || || ||| Sbjct 2499 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 2557 Query 42596 TTTTTATACATATTCCAGAT 42615 || || ||||| | |||||| Sbjct 2558 TTCTTGTACATCTCCCAGAT 2577 >seq198733 Length=2163 Score = 147 bits (162), Expect = 3e-30 Identities = 375/560 (67%), Gaps = 12/560 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 1707 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 1648 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 |||||||| ||||| ||||| || ||||| || || || ||| | | | || || ||||| Sbjct 1647 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 1589 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCAT- 42239 ||| || || || || || || | | || | ||| | | || | | || | Sbjct 1588 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 1529 Query 42240 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 || |||||||| ||||| ||||||||||| || ||| | |||| || || ||||| Sbjct 1528 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 1469 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 ||||| || || || || || || || || ||||| | || || Sbjct 1468 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 1409 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 ||| || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 1408 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 1349 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 ||||| || || | || || | || | ||| ||| ||| || ||||| || || Sbjct 1348 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 1289 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATT-CC 42536 || || || ||||| || || || || || | | |||| || |||| | ||| || Sbjct 1288 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGTTGAGCGATTCCC 1230 Query 42537 AATCATTGATATCTTTAGAT-ATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 | | || || || || | | ||| ||||| || ||||||| || || || || ||| Sbjct 1229 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 1171 Query 42596 TTTTTATACATATTCCAGAT 42615 || || ||||| | |||||| Sbjct 1170 TTCTTGTACATCTCCCAGAT 1151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669258860914120