Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq219401 95.1 1e-14 seq204705 95.1 1e-14 seq215899 89.7 5e-13 seq193485 87.8 2e-12 seq189084 86.0 6e-12 >seq219401 Length=2348 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| | |||| ||| ||||| || |||||| Sbjct 835 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGACCGTCCTCGAGCTGCTTACCA 894 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| || || ||||||||||| || || || || ||||| ||| ||||| || Sbjct 895 GCGAAGATGAGGCGCTGCTGATCGGGGGGAATACCCTCCTTGTCCTGAATCTTTTGCTTG 954 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||||| | || || || | || | ||||||||||||| || Sbjct 955 ACGTTCTCGATCGTGTCCGAGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 1014 Query 143168 TTTACGAATATTTGCATAGC 143187 || ||||| || ||||| || Sbjct 1015 TTCACGAAGATCTGCATCGC 1034 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| | |||| ||| ||||| || || || Sbjct 337 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGACCGTCCTCGAGCTGCTTGCCG 396 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| ||||| |||||||| ||||| || ||||| || || || || Sbjct 397 GCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 456 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||||| | || || || | || | ||||||||||||| || Sbjct 457 ACGTTCTCGATAGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 516 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 517 TTGACGAAGATCTGCATA 534 >seq204705 Length=1723 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 ||| ||||| || |||||||| |||| || || |||||||||||||| ||||| || || Sbjct 1699 GTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTT 1640 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| ||| ||||| || | | || | ||||| ||| || || || | || | Sbjct 1639 GTCCTGAATCTTTTGCTTCACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTGAT 1580 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||||||||||| || || ||||| || |||||| Sbjct 1579 GGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 1543 >seq215899 Length=7104 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| | |||| ||| ||||| || || ||| Sbjct 996 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCA 1055 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| |||||||| || || ||||| || ||||| || || || || Sbjct 1056 GCGAAGATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 1115 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||||| | ||| || || | || | ||||||||||||| || Sbjct 1116 ACGTTCTCGATCGTGTCCGAGCTTTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTC 1175 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 1176 TTGACGAAGATCTGCAT 1192 >seq193485 Length=2074 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || || || || || |||||||| ||| | |||| ||| ||||| || Sbjct 1447 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGC 1388 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || || || |||| ||||| ||||||||||| || ||||| || ||||| ||| ||| Sbjct 1387 TTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGAATCTTT 1328 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || || | | || | ||||| | | || || || | || | ||||||||||| Sbjct 1327 TGCTTCACGTTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTG 1268 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | || || ||||| |||||||| Sbjct 1267 AGGGTCTTGACGAAGATTTGCAT 1245 >seq189084 Length=554 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/200 (70%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA--GTCTTCGAGTTGTTTAC 143045 || || || || || |||||||| ||| | || |||| ||| ||||| || || | Sbjct 309 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGT--TCGACCGTCCTCGAGCTGCTTGC 366 Query 143046 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTT 143105 | || |||| || || ||||| |||||||| ||||| || ||||| ||| || || | Sbjct 367 CGGCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGCT 426 Query 143106 TTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATG 143165 | | | || | |||||||| | || || || | || | |||||||||||| | | Sbjct 427 TCACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGCG 486 Query 143166 TTTTTACGAATATTTGCATA 143185 | || ||||| || |||||| Sbjct 487 TCTTGACGAAGATCTGCATA 506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505593891417840