Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq203116 196 7e-45 seq202680 196 7e-45 seq202679 196 7e-45 seq198733 196 7e-45 seq217546 179 5e-40 >seq203116 Length=2194 Score = 196 bits (216), Expect = 7e-45 Identities = 406/591 (69%), Gaps = 24/591 (4%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| |||||| | | || ||| ||||| |||||||| ||||| |||||||||| Sbjct 1037 CTGTTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTC 978 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| || ||||||||| | ||| || | | ||||| ||| | || Sbjct 977 TGGACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGGGAA--TCGCTCAAC- 921 Query 125115 GAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTC-CGATG 125169 ||| || |||||| || || |||| | ||||||||||| || |||| ||| | Sbjct 920 --AAC-GA-CGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACG 866 Query 125170 GAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTG 125228 | ||||| ||| ||||| | | | || ||| | ||| || | || |||| | Sbjct 865 GCATCGTGGCCGAGAATCTCGCCGGC-CGCTTCATGAAGGAGGTGCAGGTGCCCGAGGCG 807 Query 125229 TCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288 ||||| ||||| || |||||| || |||||| | ||||| || |||||||| Sbjct 806 CGCTGCTTCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTC 747 Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGAC 125348 || || |||| ||| | || || || || ||||| ||| ||||| Sbjct 746 CTTATCGACACCTACGTCAAGGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAG 687 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || ||||| ||| | || ||||| | |||| ||| ||||||| | | || | Sbjct 686 ACCGTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--G 629 Query 125409 TCTTCG-----TACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463 | ||| | |||||| | || || | |||||||||||| |||||||||||||| | Sbjct 628 GCGTCGAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCT 569 Query 125464 CGGGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 | || || || ||| ||||||| ||||||||||||||||| ||||||||||| || | Sbjct 568 CCGGCAGCTTCTGCT-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCC 510 Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||||||| | || || || |||||||| ||||| ||||| ||| Sbjct 509 TTCAGTAACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCC 459 >seq202680 Length=3004 Score = 196 bits (216), Expect = 7e-45 Identities = 406/591 (69%), Gaps = 24/591 (4%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| |||||| | | || ||| ||||| |||||||| ||||| |||||||||| Sbjct 2670 CTGTTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTC 2611 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| || ||||||||| | ||| || | | ||||| ||| | || Sbjct 2610 TGGACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGGGAA--TCGCTCAAC- 2554 Query 125115 GAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTC-CGATG 125169 ||| || |||||| || || |||| | ||||||||||| || |||| ||| | Sbjct 2553 --AAC-GA-CGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACG 2499 Query 125170 GAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTG 125228 | ||||| ||| ||||| | | | || ||| | ||| || | || |||| | Sbjct 2498 GCATCGTGGCCGAGAATCTCGCCGGC-CGCTTCATGAAGGAGGTGCAGGTGCCCGAGGCG 2440 Query 125229 TCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288 ||||| ||||| || |||||| || |||||| | ||||| || |||||||| Sbjct 2439 CGCTGCTTCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTC 2380 Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGAC 125348 || || |||| ||| | || || || || ||||| ||| ||||| Sbjct 2379 CTTATCGACACCTACGTCAAGGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAG 2320 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || ||||| ||| | || ||||| | |||| ||| ||||||| | | || | Sbjct 2319 ACCGTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--G 2262 Query 125409 TCTTCG-----TACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463 | ||| | |||||| | || || | |||||||||||| |||||||||||||| | Sbjct 2261 GCGTCGAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCT 2202 Query 125464 CGGGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 | || || || ||| ||||||| ||||||||||||||||| ||||||||||| || | Sbjct 2201 CCGGCAGCTTCTGCT-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCC 2143 Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||||||| | || || || |||||||| ||||| ||||| ||| Sbjct 2142 TTCAGTAACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCC 2092 >seq202679 Length=2935 Score = 196 bits (216), Expect = 7e-45 Identities = 406/591 (69%), Gaps = 24/591 (4%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| |||||| | | || ||| ||||| |||||||| ||||| |||||||||| Sbjct 2601 CTGTTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTC 2542 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| || ||||||||| | ||| || | | ||||| ||| | || Sbjct 2541 TGGACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGGGAA--TCGCTCAAC- 2485 Query 125115 GAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTC-CGATG 125169 ||| || |||||| || || |||| | ||||||||||| || |||| ||| | Sbjct 2484 --AAC-GA-CGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACG 2430 Query 125170 GAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTG 125228 | ||||| ||| ||||| | | | || ||| | ||| || | || |||| | Sbjct 2429 GCATCGTGGCCGAGAATCTCGCCGGC-CGCTTCATGAAGGAGGTGCAGGTGCCCGAGGCG 2371 Query 125229 TCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288 ||||| ||||| || |||||| || |||||| | ||||| || |||||||| Sbjct 2370 CGCTGCTTCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTC 2311 Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGAC 125348 || || |||| ||| | || || || || ||||| ||| ||||| Sbjct 2310 CTTATCGACACCTACGTCAAGGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAG 2251 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || ||||| ||| | || ||||| | |||| ||| ||||||| | | || | Sbjct 2250 ACCGTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--G 2193 Query 125409 TCTTCG-----TACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463 | ||| | |||||| | || || | |||||||||||| |||||||||||||| | Sbjct 2192 GCGTCGAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCT 2133 Query 125464 CGGGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 | || || || ||| ||||||| ||||||||||||||||| ||||||||||| || | Sbjct 2132 CCGGCAGCTTCTGCT-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCC 2074 Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||||||| | || || || |||||||| ||||| ||||| ||| Sbjct 2073 TTCAGTAACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCC 2023 >seq198733 Length=2163 Score = 196 bits (216), Expect = 7e-45 Identities = 406/591 (69%), Gaps = 24/591 (4%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| |||||| | | || ||| ||||| |||||||| ||||| |||||||||| Sbjct 1127 CTGTTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTC 1186 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| || ||||||||| | ||| || | | ||||| ||| | || Sbjct 1187 TGGACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGGGAA--TCGCTCAAC- 1243 Query 125115 GAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTC-CGATG 125169 ||| || |||||| || || |||| | ||||||||||| || |||| ||| | Sbjct 1244 --AAC-GA-CGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACG 1298 Query 125170 GAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTG 125228 | ||||| ||| ||||| | | | || ||| | ||| || | || |||| | Sbjct 1299 GCATCGTGGCCGAGAATCTCGCCGGC-CGCTTCATGAAGGAGGTGCAGGTGCCCGAGGCG 1357 Query 125229 TCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288 ||||| ||||| || |||||| || |||||| | ||||| || |||||||| Sbjct 1358 CGCTGCTTCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTC 1417 Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGAC 125348 || || |||| ||| | || || || || ||||| ||| ||||| Sbjct 1418 CTTATCGACACCTACGTCAAGGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAG 1477 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || ||||| ||| | || ||||| | |||| ||| ||||||| | | || | Sbjct 1478 ACCGTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--G 1535 Query 125409 TCTTCG-----TACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463 | ||| | |||||| | || || | |||||||||||| |||||||||||||| | Sbjct 1536 GCGTCGAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCT 1595 Query 125464 CGGGTAG-TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 | || || || ||| ||||||| ||||||||||||||||| ||||||||||| || | Sbjct 1596 CCGGCAGCTTCTGC-TCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCC 1654 Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||||||| | || || || |||||||| ||||| ||||| ||| Sbjct 1655 TTCAGTAACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCC 1705 >seq217546 Length=10770 Score = 179 bits (198), Expect = 5e-40 Identities = 332/483 (69%), Gaps = 8/483 (2%) Strand=Plus/Minus Query 96897 GGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATG 96956 || ||| | ||| ||||| | || || |||||||||||| | |||||||| |||| || Sbjct 8641 GGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATCTTTGACTTCCTCGACCTG 8582 Query 96957 CGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTG 97016 || ||| ||| || ||| || ||| | || | || || | || ||| | Sbjct 8581 AAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTGTGGATT 8522 Query 97017 CCAGATTTGTTCATGAAGCGCGTCAACGAC-GGTGGCTACTGGAGCCTAATGTGCCCCGA 97075 || || |||||||||||||||| | ||| || ||| ||||| || | |||||| | Sbjct 8521 CCCGACCTGTTCATGAAGCGCGTGGA-GACGGGCGGCGACTGGTCGCTCTTTTGCCCCAA 8463 Query 97076 CTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTA 97135 | | | ||||| |||| ||| | |||||| | ||||| |||| |||||| | ||| Sbjct 8462 CGAGGCCCCCGGCCTGTTCGACTCGTGGGGCAAGGAGTTCGAGGAGAAGTACGAGCGCTA 8403 Query 97136 CGAGCAAGAGGGCCGATACGTGAGACG---AGTCGATGCACGAGAACTGTGGAAGGCCAT 97192 |||||| |||||||| || | | || ||| | || | || |||||| ||||| Sbjct 8402 CGAGCAGGAGGGCCG---CGCGCGCCGCGTGGTCAAGGCCCAGGAGCTGTGGTTCGCCAT 8346 Query 97193 CGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCG 97252 | | | | ||| | ||||| || || || ||||| || |||||||| || || | Sbjct 8345 CCTCGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTGTACAAGGACGCCTGCAACGG 8286 Query 97253 CAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGT 97312 ||| |||||| | ||| | ||||||||| || || || ||||||||||| | || Sbjct 8285 CAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAACCTGTGCACGGAGGTCGT 8226 Query 97313 AGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAA 97372 ||||| | || || |||||| ||| || ||| ||||| ||| || |||||||| Sbjct 8225 CCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGCCTCGCTCGCGCTGCCCAA 8166 Query 97373 GTT 97375 ||| Sbjct 8165 GTT 8163 Score = 89.7 bits (98), Expect = 8e-13 Identities = 132/183 (72%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 98040 TACAAGACTGTCTGGGAGATTCCG-ACCAAGACGCTGATCGATATGGCTGCCGACAGAGG 98098 |||||||| || |||||| | ||| | | | | | ||||| ||||| ||||| | Sbjct 7489 TACAAGACCGTGTGGGAGCTCCCGCAGCGCGTCA-TCATCGACATGGCCGCCGATCGCTC 7431 Query 98099 TGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTA---CAG 98155 | |||||| |||||||| || ||| |||| | ||| | | ||||||| | | || Sbjct 7430 GGCCTACATCGACCAGAGCCAGTCGCTCAACGTCTACATGGGCGAGCCCTCGTTTGCCAA 7371 Query 98156 TCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 | | || ||||| ||||| ||||| ||| ||||||||||||||| ||||||||||| Sbjct 7370 GC---TCACCTCGATGCACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTA 7314 Query 98216 TCT 98218 || Sbjct 7313 CCT 7311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 738982965176120