Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq187864 100 7e-16 seq204705 98.7 2e-15 seq219401 96.9 8e-15 seq189084 93.3 1e-13 seq193485 91.5 3e-13 seq215899 84.2 5e-11 >seq187864 Length=484 Score = 100 bits (110), Expect = 7e-16 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| || || || || || || || || || | ||| || || || || || || || Sbjct 17 CCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCC 76 Query 104462 TTATCCTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGT 104520 || ||||||||||| ||| || || || || | ||||||||| | || ||||| || || Sbjct 77 TTGTCCTGAATCTTCTGC-TTCACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGGGT 135 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||||||| || || || || || || |||||||| Sbjct 136 AATAGTCTTACCGGTCAGGGTCTTGACGAAGATCTGCAT 174 >seq204705 Length=1723 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 104381 TTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGT 104440 || ||||| | || || | ||||| || || || || ||||| || || || | ||| Sbjct 1722 TTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGC 1663 Query 104441 TGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCG 104500 ||||| ||||| || || || || |||||||||||| || || || || | ||| ||| Sbjct 1662 TGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTCACGTTCTCGATGGTGTCG 1603 Query 104501 CTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || | || ||||| || || || ||||| || || || || || || || |||||||| Sbjct 1602 CTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1544 >seq219401 Length=2348 Score = 96.9 bits (106), Expect = 8e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| | || || | |||||| Sbjct 819 AAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGACCGTC 878 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || | ||| ||||| || || || || || || || Sbjct 879 CTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCGGGGGGAATACCCTCCTTGTC 938 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAG 104525 |||||||||| || || || || | || || | || | || ||||| || || || | Sbjct 939 CTGAATCTTTTGCTTGACGTTCTCGATCGTGTC-CGAGCTCTCCACCTCGAGGGTGATGG 997 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTA 104567 |||| || || || || || || || |||||||| ||||| Sbjct 998 TCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATCGCGTGTA 1039 >seq189084 Length=554 Score = 93.3 bits (102), Expect = 1e-13 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || |||| |||||| || || || || || Sbjct 309 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGACCGTCCTCGAGCTGCTTGCCG 368 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || || ||||| || || || || ||||||||||| ||| || Sbjct 369 GCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TT 427 Query 104482 TACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540 || || || | || || | || | || ||||| || || || ||||| || || || | Sbjct 428 CACGTTCTCGATCGTGTC-CGAGCTCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGCG 486 Query 104541 TTTTTACAAATATCTGCAT 104559 | || || || |||||||| Sbjct 487 TCTTGACGAAGATCTGCAT 505 >seq193485 Length=2074 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | |||||| || || || || || Sbjct 1441 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCG 1382 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || || || || || |||||||||||| || Sbjct 1381 GCGAAGATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTC 1322 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||| | || ||||| || || || ||||| || || || || Sbjct 1321 ACGTTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 1262 Query 104543 TTTACAAATATCTGCATT 104560 || || || || |||||| Sbjct 1261 TTGACGAAGATTTGCATT 1244 >seq215899 Length=7104 Score = 84.2 bits (92), Expect = 5e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || || | ||| ||||| ||||| || || || || ||| Sbjct 813 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCC 872 Query 104468 TGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| ||| || || || || | || ||||| | || ||||| || ||||| || Sbjct 873 TGAATCTTCTGC-TTCACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTAATGGT 931 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || || || || || |||||||| Sbjct 932 CTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1148091865527996