Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_005946.1 Length=105903 Score E Sequences producing significant alignments: (Bits) Value seq217729 91.5 1e-13 seq196592 91.5 1e-13 seq183814 91.5 1e-13 seq183813 91.5 1e-13 >seq217729 Length=2057 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | ||||| |||||||| ||||||||||||| ||||||| || || || Sbjct 1734 GGTCATACGCGAGGGGAAGGCGTGCGGGTTGATGATGACGTCGGGCGACATGCCCGACTC 1793 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGACAGCTCCG-CATGTC-CCCTTTTGCGCCGTG 71535 | ||||||||||| |||||| | | |||||| | |||| | ||||| ||| ||||| Sbjct 1794 GCTGAAGGGCATGTTCTCCTGCGGC--CACAGCTGGGACATGACACCCTTCTGC-CCGTG 1850 Query 71536 AAT-GACGCAAACTTGTCGCCCATCTCTGGGT 71566 | ||||| |||||||| || ||| | |||| Sbjct 1851 CCTCGACGCGAACTTGTCTCCGATCACCGGGT 1882 >seq196592 Length=1073 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | ||||| |||||||| ||||||||||||| ||||||| || || || Sbjct 750 GGTCATACGCGAGGGGAAGGCGTGCGGGTTGATGATGACGTCGGGCGACATGCCCGACTC 809 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGACAGCTCCG-CATGTC-CCCTTTTGCGCCGTG 71535 | ||||||||||| |||||| | | |||||| | |||| | ||||| ||| ||||| Sbjct 810 GCTGAAGGGCATGTTCTCCTGCGGC--CACAGCTGGGACATGACACCCTTCTGC-CCGTG 866 Query 71536 AAT-GACGCAAACTTGTCGCCCATCTCTGGGT 71566 | ||||| |||||||| || ||| | |||| Sbjct 867 CCTCGACGCGAACTTGTCTCCGATCACCGGGT 898 >seq183814 Length=1086 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | ||||| |||||||| ||||||||||||| ||||||| || || || Sbjct 85 GGTCATACGCGAGGGGAAGGCGTGCGGGTTGATGATGACGTCGGGCGACATGCCCGACTC 144 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGACAGCTCCG-CATGTC-CCCTTTTGCGCCGTG 71535 | ||||||||||| |||||| | | |||||| | |||| | ||||| ||| ||||| Sbjct 145 GCTGAAGGGCATGTTCTCCTGCGGC--CACAGCTGGGACATGACACCCTTCTGC-CCGTG 201 Query 71536 AAT-GACGCAAACTTGTCGCCCATCTCTGGGT 71566 | ||||| |||||||| || ||| | |||| Sbjct 202 CCTCGACGCGAACTTGTCTCCGATCACCGGGT 233 >seq183813 Length=1164 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | ||||| |||||||| ||||||||||||| ||||||| || || || Sbjct 324 GGTCATACGCGAGGGGAAGGCGTGCGGGTTGATGATGACGTCGGGCGACATGCCCGACTC 265 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGACAGCTCCG-CATGTC-CCCTTTTGCGCCGTG 71535 | ||||||||||| |||||| | | |||||| | |||| | ||||| ||| ||||| Sbjct 264 GCTGAAGGGCATGTTCTCCTGCGGC--CACAGCTGGGACATGACACCCTTCTGC-CCGTG 208 Query 71536 AAT-GACGCAAACTTGTCGCCCATCTCTGGGT 71566 | ||||| |||||||| || ||| | |||| Sbjct 207 CCTCGACGCGAACTTGTCTCCGATCACCGGGT 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337839406464648