Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq203874 87.8 2e-12 seq191119 87.8 2e-12 seq189946 87.8 2e-12 seq179504 87.8 2e-12 seq219401 86.0 6e-12 >seq203874 Length=1337 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 68078 CGCGCCGTGGGATATCTTACACCACTGTTCCATCTCTCCGATCTTTATACCGCCGTCTCG 68137 |||||||||||| ||| | || | ||||||||||||| | | | ||| ||||| || Sbjct 491 CGCGCCGTGGGAGATCATGCAGTCGCGCTCCATCTCTCCGAACCTGAGACCACCGTCGCG 432 Query 68138 CGATCGTCCCGCTACGGGCTGTCGAGTAAGGGCGTCCACCGGACC-CGACACGCGGCTGT 68196 |||||| ||| | |||||||| | || || | |||||| || ||| |||| || Sbjct 431 CGATCGGCCCTCCACGGGCTGCCTCGTGAGAATCTGCACCGGGCCGCGA-GCGCGCGAGT 373 Query 68197 GAATTTTGCCGGACACCATGTGTCTCAGTCTCTGGTA 68233 | || ||| || ||||||||| |||| |||||||| Sbjct 372 GGATCTTGTCGTCCACCATGTGCTTCAGCCTCTGGTA 336 >seq191119 Length=1049 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 68078 CGCGCCGTGGGATATCTTACACCACTGTTCCATCTCTCCGATCTTTATACCGCCGTCTCG 68137 |||||||||||| ||| | || | ||||||||||||| | | | ||| ||||| || Sbjct 887 CGCGCCGTGGGAGATCATGCAGTCGCGCTCCATCTCTCCGAACCTGAGACCACCGTCGCG 828 Query 68138 CGATCGTCCCGCTACGGGCTGTCGAGTAAGGGCGTCCACCGGACC-CGACACGCGGCTGT 68196 |||||| ||| | |||||||| | || || | |||||| || ||| |||| || Sbjct 827 CGATCGGCCCTCCACGGGCTGCCTCGTGAGAATCTGCACCGGGCCGCGA-GCGCGCGAGT 769 Query 68197 GAATTTTGCCGGACACCATGTGTCTCAGTCTCTGGTA 68233 | || ||| || ||||||||| |||| |||||||| Sbjct 768 GGATCTTGTCGTCCACCATGTGCTTCAGCCTCTGGTA 732 >seq189946 Length=1293 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 68078 CGCGCCGTGGGATATCTTACACCACTGTTCCATCTCTCCGATCTTTATACCGCCGTCTCG 68137 |||||||||||| ||| | || | ||||||||||||| | | | ||| ||||| || Sbjct 1131 CGCGCCGTGGGAGATCATGCAGTCGCGCTCCATCTCTCCGAACCTGAGACCACCGTCGCG 1072 Query 68138 CGATCGTCCCGCTACGGGCTGTCGAGTAAGGGCGTCCACCGGACC-CGACACGCGGCTGT 68196 |||||| ||| | |||||||| | || || | |||||| || ||| |||| || Sbjct 1071 CGATCGGCCCTCCACGGGCTGCCTCGTGAGAATCTGCACCGGGCCGCGA-GCGCGCGAGT 1013 Query 68197 GAATTTTGCCGGACACCATGTGTCTCAGTCTCTGGTA 68233 | || ||| || ||||||||| |||| |||||||| Sbjct 1012 GGATCTTGTCGTCCACCATGTGCTTCAGCCTCTGGTA 976 >seq179504 Length=801 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 68078 CGCGCCGTGGGATATCTTACACCACTGTTCCATCTCTCCGATCTTTATACCGCCGTCTCG 68137 |||||||||||| ||| | || | ||||||||||||| | | | ||| ||||| || Sbjct 639 CGCGCCGTGGGAGATCATGCAGTCGCGCTCCATCTCTCCGAACCTGAGACCACCGTCGCG 580 Query 68138 CGATCGTCCCGCTACGGGCTGTCGAGTAAGGGCGTCCACCGGACC-CGACACGCGGCTGT 68196 |||||| ||| | |||||||| | || || | |||||| || ||| |||| || Sbjct 579 CGATCGGCCCTCCACGGGCTGCCTCGTGAGAATCTGCACCGGGCCGCGA-GCGCGCGAGT 521 Query 68197 GAATTTTGCCGGACACCATGTGTCTCAGTCTCTGGTA 68233 | || ||| || ||||||||| |||| |||||||| Sbjct 520 GGATCTTGTCGTCCACCATGTGCTTCAGCCTCTGGTA 484 >seq219401 Length=2348 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || | ||||| | | |||||||| || |||||||| || ||| Sbjct 877 TCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCGGGGGGAATACCCTCCTTG 936 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| ||| ||||||| ||| ||||| | | || || || | |||||| Sbjct 937 TCCTGAATCTTTTGCTTGACGTTCTCGATCGTGTCCGAGCTCTCCACCTCGAGGGTGATG 996 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||| ||||||||||| Sbjct 997 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447035216941320