Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq218318 134 2e-27 seq208816 105 1e-18 seq185939 102 1e-17 seq42268 80.6 4e-11 >seq218318 Length=7404 Score = 134 bits (148), Expect = 2e-27 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 1066 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 1007 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| || | || | ||| ||||| Sbjct 1006 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGCGTGCTCAAGGTCTTC 947 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || | ||| ||||||||||| | ||||| ||| Sbjct 946 CTCGAGAACGTCATCCGCGACGCYGTRACCTACACCGAGCACGCCCGCAGGAAGACCGTC 887 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| ||||||| || | || | || ||||| Sbjct 886 ACTGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGGCCG 846 >seq208816 Length=3205 Score = 105 bits (116), Expect = 1e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 3063 CTCCGTGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 3122 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| || | || | ||| ||||| Sbjct 3123 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGCGTGCTCAAGGTCTTC 3182 Query 16574 CTCAAGACCGTTATCC 16589 ||| ||| ||| |||| Sbjct 3183 CTCGAGAACGTCATCC 3198 >seq185939 Length=3221 Score = 102 bits (112), Expect = 1e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 156 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 97 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| || |||| || | || | ||| ||||| Sbjct 96 GGTGTCAAGCGTATCTCGGGCATGATCTACGAGGAGACCCGCGGCGTGCTCAAGGTCTTC 37 Query 16574 CTCAAGACCGTTATCC 16589 ||| ||| ||| |||| Sbjct 36 CTCGAGAACGTCATCC 21 >seq42268 Length=127 Score = 80.6 bits (88), Expect = 4e-11 Identities = 89/119 (75%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 || ||||| || ||||| ||||||||| |||| || || |||| ||||||| || | | Sbjct 5 CTCGCTCGCCGCGGTGGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGT 64 Query 16559 GTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGC 16617 || | ||| |||||||| ||| ||| |||| || || | ||| ||||||||||| Sbjct 65 GTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTGACCTACACCGAGCACGC 123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78870269971941