Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq203116 136 5e-27 seq202680 136 5e-27 seq202679 136 5e-27 seq198733 136 5e-27 >seq203116 Length=2194 Score = 136 bits (150), Expect = 5e-27 Identities = 371/560 (66%), Gaps = 10/560 (2%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 457 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 516 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||| ||||| || ||||| || ||||| ||| || || |||||| Sbjct 517 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAG 576 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT-G 33479 || || || || || || || | | || | ||| | | || ||| || | | Sbjct 577 ATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTG 636 Query 33480 T--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 | |||||||| ||||| ||||||||||| || ||| | |||| || || ||||| Sbjct 637 TTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGCG 696 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 ||||| || || || || || || || || ||||| | || ||| Sbjct 697 CGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTAC 756 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 || || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 757 ATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGGC 816 Query 33658 ATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717 | ||| || || | || || | || | ||| || ||| || ||||| || || Sbjct 817 ACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGCC 876 Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCA 33776 || || || ||||| || || || || || | | ||||| | |||| || | ||| Sbjct 877 GCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCCA 935 Query 33777 ATCATTGATATCTTTAGAT-ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 | || || || || | | ||| ||||| || | ||||| || || ||||| |||| Sbjct 936 GTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCT 994 Query 33836 TTTTATACATGTTCCAGATG 33855 | || ||||| | ||||||| Sbjct 995 TCTTGTACATCTCCCAGATG 1014 >seq202680 Length=3004 Score = 136 bits (150), Expect = 5e-27 Identities = 371/560 (66%), Gaps = 10/560 (2%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 2090 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 2149 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||| ||||| || ||||| || ||||| ||| || || |||||| Sbjct 2150 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAG 2209 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT-G 33479 || || || || || || || | | || | ||| | | || ||| || | | Sbjct 2210 ATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTG 2269 Query 33480 T--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 | |||||||| ||||| ||||||||||| || ||| | |||| || || ||||| Sbjct 2270 TTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGCG 2329 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 ||||| || || || || || || || || ||||| | || ||| Sbjct 2330 CGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTAC 2389 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 || || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 2390 ATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGGC 2449 Query 33658 ATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717 | ||| || || | || || | || | ||| || ||| || ||||| || || Sbjct 2450 ACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGCC 2509 Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCA 33776 || || || ||||| || || || || || | | ||||| | |||| || | ||| Sbjct 2510 GCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCCA 2568 Query 33777 ATCATTGATATCTTTAGAT-ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 | || || || || | | ||| ||||| || | ||||| || || ||||| |||| Sbjct 2569 GTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCT 2627 Query 33836 TTTTATACATGTTCCAGATG 33855 | || ||||| | ||||||| Sbjct 2628 TCTTGTACATCTCCCAGATG 2647 >seq202679 Length=2935 Score = 136 bits (150), Expect = 5e-27 Identities = 371/560 (66%), Gaps = 10/560 (2%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 2021 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 2080 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||| ||||| || ||||| || ||||| ||| || || |||||| Sbjct 2081 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAG 2140 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT-G 33479 || || || || || || || | | || | ||| | | || ||| || | | Sbjct 2141 ATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTG 2200 Query 33480 T--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 | |||||||| ||||| ||||||||||| || ||| | |||| || || ||||| Sbjct 2201 TTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGCG 2260 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 ||||| || || || || || || || || ||||| | || ||| Sbjct 2261 CGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTAC 2320 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 || || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 2321 ATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGGC 2380 Query 33658 ATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717 | ||| || || | || || | || | ||| || ||| || ||||| || || Sbjct 2381 ACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGCC 2440 Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCA 33776 || || || ||||| || || || || || | | ||||| | |||| || | ||| Sbjct 2441 GCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCCA 2499 Query 33777 ATCATTGATATCTTTAGAT-ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 | || || || || | | ||| ||||| || | ||||| || || ||||| |||| Sbjct 2500 GTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCT 2558 Query 33836 TTTTATACATGTTCCAGATG 33855 | || ||||| | ||||||| Sbjct 2559 TCTTGTACATCTCCCAGATG 2578 >seq198733 Length=2163 Score = 136 bits (150), Expect = 5e-27 Identities = 371/560 (66%), Gaps = 10/560 (2%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 1707 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 1648 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||| ||||| || ||||| || ||||| ||| || || |||||| Sbjct 1647 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAG 1588 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT-G 33479 || || || || || || || | | || | ||| | | || ||| || | | Sbjct 1587 ATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTG 1528 Query 33480 T--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 | |||||||| ||||| ||||||||||| || ||| | |||| || || ||||| Sbjct 1527 TTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGCG 1468 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 ||||| || || || || || || || || ||||| | || ||| Sbjct 1467 CGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTAC 1408 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 || || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 1407 ATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGGC 1348 Query 33658 ATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717 | ||| || || | || || | || | ||| || ||| || ||||| || || Sbjct 1347 ACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGCC 1288 Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCA 33776 || || || ||||| || || || || || | | ||||| | |||| || | ||| Sbjct 1287 GCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCCA 1229 Query 33777 ATCATTGATATCTTTAGAT-ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 | || || || || | | ||| ||||| || | ||||| || || ||||| |||| Sbjct 1228 GTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCT 1170 Query 33836 TTTTATACATGTTCCAGATG 33855 | || ||||| | ||||||| Sbjct 1169 TCTTGTACATCTCCCAGATG 1150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621201881042920