Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq217546 241 3e-58 >seq217546 Length=10770 Score = 241 bits (266), Expect = 3e-58 Identities = 857/1325 (65%), Gaps = 26/1325 (2%) Strand=Plus/Minus Query 363820 GGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATT 363879 || || || |||||||| || || || || || || |||||||| || || || || Sbjct 8659 GGAGGTGGTAAGCGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATC 8600 Query 363880 TTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTG 363939 ||||| || || || || ||| ||| || || ||||| || || || ||||| Sbjct 8599 TTTGACTTCCTCGACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTC 8540 Query 363940 TTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGG 363999 ||||| | || ||| || | |||| || ||||||||||||||| | || | ||| Sbjct 8539 TTCTACGGCCTGTGGATTCCCGACCTGTTCATGAAGCGCGTGGAGACGGGCGGCGACTGG 8480 Query 364000 TCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTT 364059 || ||||||||||| |||| || || || | ||| ||||| | || | | Sbjct 8479 TCGCTCTTTTGCCCCAACGAGGCCCCCGGCCTGTTCGACTCGTGGGGCAAGGAGTTCGAG 8420 Query 364060 GCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAA----GACAATTCCCGCACA 364115 | ||||| || || |||||| || || | ||| ||| | Sbjct 8419 GAGAAGTACGAGCGCTACGAGCAGGAGGGCCGCGCGCGCCGCGTGGTCAAGGCCC----A 8364 Query 364116 GAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTA 364175 | |||| ||||| |||||| | || |||||||| ||||| || || ||||| ||| |||| Sbjct 8363 GGAGCTGTGGTTCGCCATCCTCGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTGTA 8304 Query 364176 CAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAA 364235 ||| || | |||||| |||||||||||||||||||||| || || || ||| | || Sbjct 8303 CAAGGACGCCTGCAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAA 8244 Query 364236 CCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGC 364295 ||| || || ||| | | | ||||| | ||||||||| ||||| || ||||| || Sbjct 8243 CCTGTGCACGGAGGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGC 8184 Query 364296 GTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTACTTTTGACCACCAGCATCTTTATGA 364355 ||| ||||||| || ||| | | | || |||||||||||| | || | || Sbjct 8183 CTCGCTCGCGCTGCCCAAGTTCATCACCAACGGCGAGTTTGACCACCAGAAGCTGCACGA 8124 Query 364356 CGTAACCT-ATCATGCT-ACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCA 364413 ||| | | | || | || || ||| ||||||| ||||||| || || || || Sbjct 8123 CGT--CGTGAAGGTGGTCACCAAGAACCTCAACAAGGTGATCGACATCAACTACTACCCC 8066 Query 364414 ATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGC 364473 | || || ||| || || ||||| || | || || || | || || |||||| Sbjct 8065 GTGCCCGAGGCCCGCAACTCGAACATGCGCCACAGGCCCATCGGCATCGGAGTGCAGGGC 8006 Query 364474 CTCGCTGACGTTTTTATG---ATGCTCAA--GATGGCATTTGATTCGCCTGACGCTCGTG 364528 || || ||||| || ||| |||| | | ||| | || || | || || || | Sbjct 8005 CTGGCCGACGTCTTCATGATCATGCGCCACCCGTGGGA---GA-GCGAC-GAGGCCCGCG 7951 Query 364529 TTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATT 364588 || || | ||||| || || || || | ||||| || || ||| || Sbjct 7950 AGCTCAACCGCGCCATCTTCGAGACCATCTACTACGCCGCCCTGGTCGCCTCGAACGAGC 7891 Query 364589 TGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAAT 364648 | || | | |||| | ||| || || ||||| || || || |||| || Sbjct 7890 TCGCGCAGGTCGAGGGCACCTACCAGACCTACGAGGGCTCGCCCGCGTCCAAGGGCAAGC 7831 Query 364649 TCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTT 364708 ||||| || || ||| ||| ||| || | | | ||| |||||| ||||| || Sbjct 7830 TCCAGCCCGACCTCTGGGGCGTCGTGCCGTCGGACAGGTGGGACTGGGCCACGCTCCGCG 7771 Query 364709 CCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTT 364768 ||||| | |||| ||| |||||||| ||| | ||||||||||||||||| | Sbjct 7770 CCAACATCGCCCAGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCT 7711 Query 364769 CTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATT 364828 | || | |||||||| || |||||||||||||| || || | || | ||| | || Sbjct 7710 CGACCTCGCAGATCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTACA 7651 Query 364829 CACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTT 364888 | ||||| | || |||| || || | || || || || |||| | || || Sbjct 7650 CCCGCCGCATCCTCGCCGGCGACTTCACCGTCGTCAACGAGCACCTTCTGCGCGAGCTCC 7591 Query 364889 CCGACCGCGGGCTGTGGGGTGACAGC-ATGAAGAACTATATCATCGCCGCTAATGGTTCT 364947 | ||||| || | || | | || | |||||| | || || | || || || Sbjct 7590 AGCAGCGCGGCCTCT-GGTCGCCCGCGCTCAAGAACAAGCTCGTCTCGCACAACGGCTCG 7532 Query 364948 GTGCAGAACATTCCAGGA-TTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGA 365006 || ||| || || |||| | || || || | ||| | ||||| ||||| ||||| Sbjct 7531 GTCCAGCGCA-TCGAGGAGATCCCCGACGACATCAAGAAGCTGTACAAGACCGTGTGGGA 7473 Query 365007 AATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAG 365066 | | ||| |||| || ||||| ||||||||| || | ||| ||||| Sbjct 7472 GCTCCCGCAGCGCGTCATCATCGACATGGCCGCCGATCGCTCGGCCTACATCGACCAGAG 7413 Query 365067 CCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTT 365126 ||||||| | ||||| | |||| |||| | | |||||||| || || ||||| || Sbjct 7412 CCAGTCGCTCAACGTCTACATGGGCGAGCCCTCGTTTGCCAAGCTCACCTCGATGCACTT 7353 Query 365127 CTACG 365131 ||||| Sbjct 7352 CTACG 7348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1299610687375134