Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq223632 109 5e-19 seq193485 107 2e-18 seq215899 104 2e-17 seq204705 100 2e-16 seq186964 95.1 1e-14 seq223985 89.7 4e-13 seq213466 89.7 4e-13 seq219401 87.8 2e-12 seq11024 87.8 2e-12 seq157349 84.2 2e-11 seq25307 84.2 2e-11 >seq223632 Length=4737 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | || || || | || ||| |||| |||||| ||| Sbjct 2322 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAG 2381 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | ||||| || ||||| ||||| || ||||| ||||||||||| Sbjct 2382 CGACACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCA 2441 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | || ||||||||| ||||| || | | | | || ||| || || Sbjct 2442 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAA 2501 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| || || || || || Sbjct 2502 CATCCAGAAGGAGTCGAC 2519 >seq193485 Length=2074 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || || | || || || | || ||| |||| |||||| | Sbjct 1244 AATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTC 1303 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | || || ||||||||| ||||| || ||||| || |||||||| Sbjct 1304 CGACACCATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGCATCCCCCCCGATCA 1363 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | || ||||||||| ||||| || | | | | || ||| || || Sbjct 1364 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTCGCCGACTACAA 1423 Query 24170 CATTCAAAAAGAATCTACAATTCA 24193 ||| || || || || || |||| Sbjct 1424 CATCCAGAAGGAGTCCACCCTTCA 1447 >seq215899 Length=7104 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | |||||| |||| |||||| ||| | Sbjct 964 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATTACCCTCGAGGTCGAGTCCAGC 905 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || || || |||||| ||||| || ||||| ||||||||||| Sbjct 904 GACACGATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 845 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGA 24142 ||| | || || | || ||||||||| ||||| Sbjct 844 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGA 813 >seq204705 Length=1723 Score = 100 bits (110), Expect = 2e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| |||||| ||| | Sbjct 1544 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 1603 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||||||| ||||| || ||||| ||||||||||| Sbjct 1604 GACACCATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 1663 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||| | || || | || || ||||| ||||| || Sbjct 1664 CAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGA 1698 >seq186964 Length=541 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || |||| ||| |||| |||||| | | Sbjct 408 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCC 349 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || || || ||||| ||||| |||||||| ||||||||||| Sbjct 348 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCTCCCGATCAG 289 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||| | || || | || ||||||||| ||||| || Sbjct 288 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGA 254 >seq223985 Length=3688 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | || || || | || || |||| |||||| ||| Sbjct 3083 AATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACACTCGAGGTCGAGTCCAG 3024 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | || || || ||||| ||||| || ||||| || || || || Sbjct 3023 CGACACCATCGAAAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 2964 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | || ||||||||| ||||| || | | | | | || ||| || || Sbjct 2963 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAA 2904 Query 24170 CATTCAAAAAGAATCTACAATTCA 24193 ||| || || || || || |||| Sbjct 2903 CATCCAGAAGGAGTCCACCCTTCA 2880 >seq213466 Length=930 Score = 89.7 bits (98), Expect = 4e-13 Identities = 117/161 (73%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 23983 CAAACAA-AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTC 24041 ||| ||| ||||||| | || || || || | ||||| || | || ||| |||| ||| Sbjct 162 CAACCAACAATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTC 103 Query 24042 GAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCT 24101 ||| | ||||||||||||| | || || |||||||| ||||| || ||||| || Sbjct 102 GAGTCGTCCGACACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCC 43 Query 24102 CCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGA 24142 || || || ||| | || || | | ||||||||| ||||| Sbjct 42 CCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGA 2 >seq219401 Length=2348 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086 |||||| |||| |||||| | |||||||||||| | ||||| || ||||| ||| Sbjct 725 ATTACCCTCGAGGTCGAGAGCTCGGACACCATCGAGAACGTCAAGCAGAAGATCCAGGAC 666 Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146 || || || || |||||||| || ||| | || || | || ||||||||| ||||| || Sbjct 665 AAGGAGGGTATTCCTCCCGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGAC 606 Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 | | | | | | ||| || ||||| || || || || || Sbjct 605 GGCCGTACCCTGGCCGACTACAACATCCAGAAGGAGTCCAC 565 >seq11024 Length=199 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || |||| ||| |||| |||||| | Sbjct 53 ATGCAGATCTTTGTGAAGACCCTGACCGGTAAGACGATCACCCTCGAGGTCGAGAGCTCG 112 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || || |||||||| ||||| || ||||| ||||||||||| Sbjct 113 GACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCAG 172 Query 24111 CAGAGACTGATTTACGGCGGCAAGCA 24136 ||| | || || | || ||||||||| Sbjct 173 CAGCGCCTCATCTTCGCCGGCAAGCA 198 >seq157349 Length=139 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 24030 ACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAA 24089 ||| ||||||||||| ||| ||||||||||||| | || || || ||||| ||||| Sbjct 2 ACCCTCGAAGTCGAGTCCAGCGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAG 61 Query 24090 GAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 |||||||| || || || || ||| | || || | || || ||||| ||||| || Sbjct 62 GAAGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGA 117 >seq25307 Length=175 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 24025 CGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCG 24084 |||| ||| |||| |||||| | ||||||||||||| | || || || ||||| | Sbjct 155 CGATCACCCTCGAGGTCGAGAGCTCCGACACCATCGAGAACGTGAAGCAGAAGATCCAGG 96 Query 24085 ACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAG 24144 |||| || ||||| || ||||| || ||| | || || | || |||||||| ||||| | Sbjct 95 ACAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGG 36 Query 24145 ATGACAGAAACGTCAGCGATTATAACATTCAAAA 24178 | | | | | | || ||| || ||||| || || Sbjct 35 ACGGCCGTACCCTCGCCGACTACAACATCCAGAA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428761556861235