Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq212421 127 1e-24 seq210428 105 4e-18 seq11024 89.7 3e-13 seq204705 86.0 4e-12 >seq212421 Length=3345 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | | |||||||||| || |||||||| Sbjct 1687 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGGTGGTAGATAGGGACAGTGGGAATCTCGT 1746 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1747 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1781 >seq210428 Length=2035 Score = 105 bits (116), Expect = 4e-18 Identities = 71/79 (90%), Gaps = 3/79 (4%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 835 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 894 Query 20007 GGT---AATATTTAGCCTT 20022 | | ||||||||||||| Sbjct 895 GCTGACAATATTTAGCCTT 913 >seq11024 Length=199 Score = 89.7 bits (98), Expect = 3e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 38172 TGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATT 38231 || || ||||| || || ||||| || ||||||| |||| ||| || |||||| || Sbjct 198 TGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATC 139 Query 38232 TTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCC 38291 ||||||||||| |||| || || || || || || || | || || || ||||| Sbjct 138 TTTTGCTTCACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATCGTCTTACCG 79 Query 38292 GTCAAGGTTTTCACGAATATCTGCATG 38318 |||| ||| ||||| || ||||||||| Sbjct 78 GTCAGGGTCTTCACAAAGATCTGCATG 52 >seq204705 Length=1723 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 38161 CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTT 38220 |||| || | || || || || || || ||||| || ||||||| |||| ||| || | Sbjct 1700 CGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCT 1641 Query 38221 TGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAA 38280 ||||| ||| ||||||||||| |||| || || || | || || || | || | Sbjct 1640 TGTCCTGAATCTTTTGCTTCACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTGA 1581 Query 38281 TAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || |||| ||| |||||||| |||||||| Sbjct 1580 TGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334032234886847