Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07]
224,137 sequences; 115,614,128 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq203116 140 4e-28
seq202680 140 4e-28
seq202679 140 4e-28
seq198733 140 4e-28
>seq203116
Length=2194
Score = 140 bits (154), Expect = 4e-28
Identities = 374/561 (67%), Gaps = 12/561 (2%)
Strand=Plus/Plus
Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720
|| ||||| |||||||| || ||||| || | || || | ||||| || | |||
Sbjct 457 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 516
Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779
|||||||| ||||| ||||| || ||||| || ||||| ||| | | | || || |||||
Sbjct 517 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 575
Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT- 32835
|| || || || || || || | | || | ||| | | || ||| || |
Sbjct 576 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 635
Query 32836 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893
|| |||||||| ||||| ||||||||||| || ||| | |||| ||||| || ||
Sbjct 636 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 695
Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953
||||| || || || || || || || || || || | || ||
Sbjct 696 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 755
Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013
||| || || || ||||| || ||||| |||||||| ||||||||||| | |||||||
Sbjct 756 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 815
Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073
| ||| || || | || || | || | ||| || ||| || ||||| || ||
Sbjct 816 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 875
Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCC 33132
|| || || ||||| || || || || || | | ||||| | |||| || | ||
Sbjct 876 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCC 934
Query 33133 AATCATTGATATCTTTAGAT-ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191
| | || || || || | | ||| ||||| || | ||||| || || ||||| |||
Sbjct 935 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 993
Query 33192 TTTTTATACATATTCCAGATG 33212
|| || ||||| | |||||||
Sbjct 994 TTCTTGTACATCTCCCAGATG 1014
>seq202680
Length=3004
Score = 140 bits (154), Expect = 4e-28
Identities = 374/561 (67%), Gaps = 12/561 (2%)
Strand=Plus/Plus
Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720
|| ||||| |||||||| || ||||| || | || || | ||||| || | |||
Sbjct 2090 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 2149
Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779
|||||||| ||||| ||||| || ||||| || ||||| ||| | | | || || |||||
Sbjct 2150 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 2208
Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT- 32835
|| || || || || || || | | || | ||| | | || ||| || |
Sbjct 2209 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 2268
Query 32836 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893
|| |||||||| ||||| ||||||||||| || ||| | |||| ||||| || ||
Sbjct 2269 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 2328
Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953
||||| || || || || || || || || || || | || ||
Sbjct 2329 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 2388
Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013
||| || || || ||||| || ||||| |||||||| ||||||||||| | |||||||
Sbjct 2389 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 2448
Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073
| ||| || || | || || | || | ||| || ||| || ||||| || ||
Sbjct 2449 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 2508
Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCC 33132
|| || || ||||| || || || || || | | ||||| | |||| || | ||
Sbjct 2509 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCC 2567
Query 33133 AATCATTGATATCTTTAGAT-ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191
| | || || || || | | ||| ||||| || | ||||| || || ||||| |||
Sbjct 2568 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 2626
Query 33192 TTTTTATACATATTCCAGATG 33212
|| || ||||| | |||||||
Sbjct 2627 TTCTTGTACATCTCCCAGATG 2647
>seq202679
Length=2935
Score = 140 bits (154), Expect = 4e-28
Identities = 374/561 (67%), Gaps = 12/561 (2%)
Strand=Plus/Plus
Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720
|| ||||| |||||||| || ||||| || | || || | ||||| || | |||
Sbjct 2021 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 2080
Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779
|||||||| ||||| ||||| || ||||| || ||||| ||| | | | || || |||||
Sbjct 2081 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 2139
Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT- 32835
|| || || || || || || | | || | ||| | | || ||| || |
Sbjct 2140 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 2199
Query 32836 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893
|| |||||||| ||||| ||||||||||| || ||| | |||| ||||| || ||
Sbjct 2200 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 2259
Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953
||||| || || || || || || || || || || | || ||
Sbjct 2260 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 2319
Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013
||| || || || ||||| || ||||| |||||||| ||||||||||| | |||||||
Sbjct 2320 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 2379
Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073
| ||| || || | || || | || | ||| || ||| || ||||| || ||
Sbjct 2380 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 2439
Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCC 33132
|| || || ||||| || || || || || | | ||||| | |||| || | ||
Sbjct 2440 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCC 2498
Query 33133 AATCATTGATATCTTTAGAT-ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191
| | || || || || | | ||| ||||| || | ||||| || || ||||| |||
Sbjct 2499 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 2557
Query 33192 TTTTTATACATATTCCAGATG 33212
|| || ||||| | |||||||
Sbjct 2558 TTCTTGTACATCTCCCAGATG 2578
>seq198733
Length=2163
Score = 140 bits (154), Expect = 4e-28
Identities = 374/561 (67%), Gaps = 12/561 (2%)
Strand=Plus/Minus
Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720
|| ||||| |||||||| || ||||| || | || || | ||||| || | |||
Sbjct 1707 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 1648
Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779
|||||||| ||||| ||||| || ||||| || ||||| ||| | | | || || |||||
Sbjct 1647 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 1589
Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT- 32835
|| || || || || || || | | || | ||| | | || ||| || |
Sbjct 1588 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 1529
Query 32836 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893
|| |||||||| ||||| ||||||||||| || ||| | |||| ||||| || ||
Sbjct 1528 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 1469
Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953
||||| || || || || || || || || || || | || ||
Sbjct 1468 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 1409
Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013
||| || || || ||||| || ||||| |||||||| ||||||||||| | |||||||
Sbjct 1408 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 1349
Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073
| ||| || || | || || | || | ||| || ||| || ||||| || ||
Sbjct 1348 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 1289
Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCC 33132
|| || || ||||| || || || || || | | ||||| | |||| || | ||
Sbjct 1288 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCC 1230
Query 33133 AATCATTGATATCTTTAGAT-ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191
| | || || || || | | ||| ||||| || | ||||| || || ||||| |||
Sbjct 1229 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 1171
Query 33192 TTTTTATACATATTCCAGATG 33212
|| || ||||| | |||||||
Sbjct 1170 TTCTTGTACATCTCCCAGATG 1150
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 631856745305200
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