Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq193485 120 3e-22 seq213466 118 9e-22 seq219401 105 6e-18 >seq193485 Length=2074 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 ||||||||||| || || ||||| | ||||| || ||||||| |||| || |||||| Sbjct 1242 ACAATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCG 1301 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| |||||| |||||||||| || ||||| || || || || || || Sbjct 1302 TCCGACACCATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGCATCCCCCCCGAT 1361 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || || |||||||| || | || || | |||||| | | ||| ||| Sbjct 1362 CAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTCGCCGACTAC 1421 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 || || || || || ||||| || || Sbjct 1422 AACATCCAGAAGGAGTCCACCCTTCA 1447 >seq213466 Length=930 Score = 118 bits (130), Expect = 9e-22 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 |||||||||||| || || ||||| |||| || || ||||||| |||| || ||||| Sbjct 157 AACAATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGTC 98 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| ||||| |||||| |||||||||| ||| ||||| || || || || ||||| Sbjct 97 GTCCGACACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 38 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACA 25144 ||| ||||| | || ||||||||||| || Sbjct 37 CCAGCAGCGCCTCATCTTTGCCGGCAAGCA 8 >seq219401 Length=2348 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| |||| || ||| || Sbjct 533 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCG 474 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||||||| ||||||| || ||| ||||| || || || || || ||||| Sbjct 473 GACACTATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 414 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || || | |||||| | | ||| ||||| Sbjct 413 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACGCTCGCCGACTACAAC 354 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || Sbjct 353 ATCCAGAAGGAGTCGACTCTCCA 331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432144291037655