Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq203116 127 2e-24 seq202680 127 2e-24 seq202679 127 2e-24 seq198733 127 2e-24 >seq203116 Length=2194 Score = 127 bits (140), Expect = 2e-24 Identities = 384/585 (66%), Gaps = 11/585 (2%) Strand=Plus/Plus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 |||| ||| || ||||| | | || || | || || || ||||||||||| || | | Sbjct 493 ATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGA-T 551 Query 93188 GAAGCA-AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 | |||| || || || || || || || || || ||||| || ||| | || | ||| || Sbjct 552 GGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTC 611 Query 93247 GGCAAAATTTGCG--GAATTAC-TGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTT 93303 ||| || | || | | | || ||||||| || | ||||| ||||| || ||||| Sbjct 612 GGCGAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTT 671 Query 93304 AATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTAT 93363 | | | || | || ||||| ||| || ||| || |||| |||| || | Sbjct 672 GACAGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGAC 731 Query 93364 GTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAA 93423 ||| || ||||| | || || ||||| || || |||| ||||| || || ||||| || Sbjct 732 GTAGGTGTCGATAAGGAGCGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAA 791 Query 93424 TCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATT 93483 |||||||| || | || || | | |||||| || | || | | ||||||| Sbjct 792 GCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATT 851 Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543 || || || || ||| || || || || ||||| | ||||| || || || | Sbjct 852 CTCGGCCACGATGCCGTCGCTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCT 911 Query 93544 CTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGA---AAGATCGACTTCTTC 93600 ||| || | || ||| ||||| | | | || | || ||||||||||| || Sbjct 912 CTCGTCGTTGTTGAGCGATTCCCAGT--GCTTCAT-GTCGGAGCTCAGATCGACTTCCTC 968 Query 93601 GACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660 | | ||||| || || || || || || |||||||| ||||| ||| || | | || Sbjct 969 GGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATGCGCTGGTGGCGGAT 1028 Query 93661 TGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || || | || || || || ||||| || | || | |||||| Sbjct 1029 GGGGAACAGCACGAATCGGTTGGGGTTCTCCTCGAGCAGCGGCTC 1073 >seq202680 Length=3004 Score = 127 bits (140), Expect = 2e-24 Identities = 384/585 (66%), Gaps = 11/585 (2%) Strand=Plus/Plus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 |||| ||| || ||||| | | || || | || || || ||||||||||| || | | Sbjct 2126 ATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGA-T 2184 Query 93188 GAAGCA-AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 | |||| || || || || || || || || || ||||| || ||| | || | ||| || Sbjct 2185 GGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTC 2244 Query 93247 GGCAAAATTTGCG--GAATTAC-TGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTT 93303 ||| || | || | | | || ||||||| || | ||||| ||||| || ||||| Sbjct 2245 GGCGAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTT 2304 Query 93304 AATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTAT 93363 | | | || | || ||||| ||| || ||| || |||| |||| || | Sbjct 2305 GACAGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGAC 2364 Query 93364 GTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAA 93423 ||| || ||||| | || || ||||| || || |||| ||||| || || ||||| || Sbjct 2365 GTAGGTGTCGATAAGGAGCGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAA 2424 Query 93424 TCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATT 93483 |||||||| || | || || | | |||||| || | || | | ||||||| Sbjct 2425 GCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATT 2484 Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543 || || || || ||| || || || || ||||| | ||||| || || || | Sbjct 2485 CTCGGCCACGATGCCGTCGCTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCT 2544 Query 93544 CTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGA---AAGATCGACTTCTTC 93600 ||| || | || ||| ||||| | | | || | || ||||||||||| || Sbjct 2545 CTCGTCGTTGTTGAGCGATTCCCAGT--GCTTCAT-GTCGGAGCTCAGATCGACTTCCTC 2601 Query 93601 GACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660 | | ||||| || || || || || || |||||||| ||||| ||| || | | || Sbjct 2602 GGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATGCGCTGGTGGCGGAT 2661 Query 93661 TGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || || | || || || || ||||| || | || | |||||| Sbjct 2662 GGGGAACAGCACGAATCGGTTGGGGTTCTCCTCGAGCAGCGGCTC 2706 >seq202679 Length=2935 Score = 127 bits (140), Expect = 2e-24 Identities = 384/585 (66%), Gaps = 11/585 (2%) Strand=Plus/Plus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 |||| ||| || ||||| | | || || | || || || ||||||||||| || | | Sbjct 2057 ATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGA-T 2115 Query 93188 GAAGCA-AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 | |||| || || || || || || || || || ||||| || ||| | || | ||| || Sbjct 2116 GGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTC 2175 Query 93247 GGCAAAATTTGCG--GAATTAC-TGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTT 93303 ||| || | || | | | || ||||||| || | ||||| ||||| || ||||| Sbjct 2176 GGCGAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTT 2235 Query 93304 AATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTAT 93363 | | | || | || ||||| ||| || ||| || |||| |||| || | Sbjct 2236 GACAGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGAC 2295 Query 93364 GTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAA 93423 ||| || ||||| | || || ||||| || || |||| ||||| || || ||||| || Sbjct 2296 GTAGGTGTCGATAAGGAGCGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAA 2355 Query 93424 TCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATT 93483 |||||||| || | || || | | |||||| || | || | | ||||||| Sbjct 2356 GCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATT 2415 Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543 || || || || ||| || || || || ||||| | ||||| || || || | Sbjct 2416 CTCGGCCACGATGCCGTCGCTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCT 2475 Query 93544 CTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGA---AAGATCGACTTCTTC 93600 ||| || | || ||| ||||| | | | || | || ||||||||||| || Sbjct 2476 CTCGTCGTTGTTGAGCGATTCCCAGT--GCTTCAT-GTCGGAGCTCAGATCGACTTCCTC 2532 Query 93601 GACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660 | | ||||| || || || || || || |||||||| ||||| ||| || | | || Sbjct 2533 GGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATGCGCTGGTGGCGGAT 2592 Query 93661 TGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || || | || || || || ||||| || | || | |||||| Sbjct 2593 GGGGAACAGCACGAATCGGTTGGGGTTCTCCTCGAGCAGCGGCTC 2637 >seq198733 Length=2163 Score = 127 bits (140), Expect = 2e-24 Identities = 384/585 (66%), Gaps = 11/585 (2%) Strand=Plus/Minus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 |||| ||| || ||||| | | || || | || || || ||||||||||| || | | Sbjct 1671 ATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGA-T 1613 Query 93188 GAAGCA-AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 | |||| || || || || || || || || || ||||| || ||| | || | ||| || Sbjct 1612 GGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTC 1553 Query 93247 GGCAAAATTTGCG--GAATTAC-TGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTT 93303 ||| || | || | | | || ||||||| || | ||||| ||||| || ||||| Sbjct 1552 GGCGAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTT 1493 Query 93304 AATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTAT 93363 | | | || | || ||||| ||| || ||| || |||| |||| || | Sbjct 1492 GACAGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGAC 1433 Query 93364 GTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAA 93423 ||| || ||||| | || || ||||| || || |||| ||||| || || ||||| || Sbjct 1432 GTAGGTGTCGATAAGGAGCGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAA 1373 Query 93424 TCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATT 93483 |||||||| || | || || | | |||||| || | || | | ||||||| Sbjct 1372 GCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATT 1313 Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543 || || || || ||| || || || || ||||| | ||||| || || || | Sbjct 1312 CTCGGCCACGATGCCGTCGCTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCT 1253 Query 93544 CTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGA---AAGATCGACTTCTTC 93600 ||| || | || ||| ||||| | | | || | || ||||||||||| || Sbjct 1252 CTCGTCGTTGTTGAGCGATTCCCAGT--GCTTCAT-GTCGGAGCTCAGATCGACTTCCTC 1196 Query 93601 GACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660 | | ||||| || || || || || || |||||||| ||||| ||| || | | || Sbjct 1195 GGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATGCGCTGGTGGCGGAT 1136 Query 93661 TGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || || | || || || || ||||| || | || | |||||| Sbjct 1135 GGGGAACAGCACGAATCGGTTGGGGTTCTCCTCGAGCAGCGGCTC 1091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555300636135880