Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq215899 93.3 3e-14 seq193485 93.3 3e-14 seq223985 89.7 4e-13 seq183577 89.7 4e-13 seq216272 84.2 2e-11 seq209232 84.2 2e-11 seq197745 84.2 2e-11 >seq215899 Length=7104 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCG 33968 || || || || || || |||||| ||||||||| |||||||| || || | | || | Sbjct 1431 AGGCGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGG 1490 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | |||| || | ||||||||||| || || |||||||||||||| || | || ||| Sbjct 1491 C-CGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGGATGCCCTC 1549 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCG 34087 |||||| || || ||||| | | ||| | | || | || ||| |||| | Sbjct 1550 CTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATTGTGTCGGACGACTCGACCTCGAGGG 1608 Query 34088 TTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 | || || || ||||| || || ||||| ||||| |||||| || Sbjct 1609 TAATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTGTT 1652 >seq193485 Length=2074 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || ||||| ||| ||||||||| |||||||| || || | || Sbjct 1462 AGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGA 1403 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||||||||| || || || ||||||||||| || | || ||| Sbjct 1402 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGGATGCCCTCC 1343 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| ||| |||||||| | | ||| | | || | || ||| |||| || Sbjct 1342 TTGTCCTGAATCTTTTGCTTCA-CGTTCTCGATGGTGTCGGACGACTCGACCTCGAGGGT 1284 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || || || ||||| || || || || |||||||||||| Sbjct 1283 GATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATT 1244 >seq223985 Length=3688 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || || || ||||| ||| ||||||||| |||||||| || || Sbjct 2855 ACCGCCGCGCAGACGAAGAACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 2914 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || |||| || | ||||||||||| || || ||||||||||| ||| || Sbjct 2915 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGG 2974 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | || ||| |||||| || || ||||| | | | | || | || ||| Sbjct 2975 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTTTCGATGGTGTCGCTGGACTCGAC 3034 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 |||| || || || || ||||| || || ||||| ||||| |||||| Sbjct 3035 CTCGAGTGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATT 3083 >seq183577 Length=864 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || || || || || |||||| |||||| || |||||||| || ||| Sbjct 59 CCGCCGCGCAGACGAAGAACGAGGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCC 118 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||||||||| || || |||||||||||||| || Sbjct 119 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGA 178 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | | ||| |||||| || || ||||| | | ||| | |||| | || ||| Sbjct 179 ATACCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATGGTATCGCTGGACTCGAC 237 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| || || ||||| ||||| ||||| Sbjct 238 CTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 285 >seq216272 Length=10499 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||| || || |||||| ||||||||| |||||||| || ||| Sbjct 1385 CCGCCGCGCAGACGGAGCAAGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 1444 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | | |||| || | ||||||||||| || || ||||||||||| || ||| Sbjct 1445 AGGGTGCCCCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 1504 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| || || ||||| Sbjct 1505 ATGCCCTCCTTGTCCTGGATCTTCTGCTT 1533 >seq209232 Length=3227 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/223 (69%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || || || || ||||||||| |||||||| || |||| || Sbjct 874 AGGCGGAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGA 933 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||||||||| || || ||||||||||| || || | || ||| Sbjct 934 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCC 993 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| || || ||||| | | ||| | | |||| || ||| |||| || Sbjct 994 TTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATCGTGTCAGATGACTCGACCTCGAGGGT 1052 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || || || ||||| || || ||||| ||||| |||||| || Sbjct 1053 GATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATTGTT 1095 >seq197745 Length=2070 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || || || || || || || ||||||||| |||||||| || ||| Sbjct 1618 CCGCCGCGCAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCC 1677 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||||||||| || || || |||||||| ||| || Sbjct 1678 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 1737 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | || ||| |||||| || || ||||| | ||| | | |||| | || ||| Sbjct 1738 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CATTCTCGATAGTATCGCTGGACTCGAC 1796 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| || || || |||||||| ||||| Sbjct 1797 CTCGAGAGTGATCGTCTTGCCGGTCAGCGTCTTGACAAAGATCTGCAT 1844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395977756677874