Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq203116 131 4e-25 seq202680 131 4e-25 seq202679 131 4e-25 seq198733 131 4e-25 >seq203116 Length=2194 Score = 131 bits (144), Expect = 4e-25 Identities = 555/861 (64%), Gaps = 33/861 (4%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||| | | | || ||||| ||||| |||||||| | ||| |||| ||| Sbjct 1034 TTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGG 975 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGAC 242994 || |||||||||| ||||| | | ||| | ||||| || ||||| || Sbjct 974 ACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGG---GAATCGCTCAACAAC 918 Query 242995 GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTC-CGATGGTATTGT 243053 ||||| | || |||||||| ||| | | | || ||||| |||| ||| || || || Sbjct 917 GACGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACGGCATCGT 859 Query 243054 GATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 243112 | || ||||| || | || ||| | ||| || ||| || ||||| || | Sbjct 858 GGCCGAGAATCTCGCCGGCCG-CTTCATGAAGGAGGTGCAGGTGCCCGAGGCGCGCTGCT 800 Query 243113 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCG 243172 | || | | |||| || ||| ||||| || || || | || ||||||| Sbjct 799 TCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTTATCG 740 Query 243173 ACGCGCTTATTTCAGATGAACAAGAGCGA-AACGAGC---TTTTCGACGCCATCGAAAAC 243228 || | || ||| | || | ||| || || | | ||| ||||||||| | | Sbjct 739 ACACC--TACGTCAA--GGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACC 684 Query 243229 ATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTA------GAACCCGGT 243282 | || | || | || ||||| | ||||| ||||||| | || || Sbjct 683 GTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTC 624 Query 243283 AAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGG 243342 | | || || ||||||||||||| | | ||| || || || | || ||||| Sbjct 623 GAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGC 564 Query 243343 AGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 243402 || |||||| ||||||| ||||| ||| || | ||||| ||||||| | | Sbjct 563 AGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGT 504 Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCA 243462 |||||| | ||||| ||||| |||||||| ||| | |||| || | || | Sbjct 503 AACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACC 444 Query 243463 AAGCTCCAGAACAAGCTACCATTCGAA--ACGGTC--AAACAAATCATCACAGAAGCAGT 243518 | |||| ||||||| || |||| ||| || || || |||||| || || || Sbjct 443 ATGCTCGTCAACAAGC--CC--TCGACCGACGTTCCCAAGCAGATCATCCTCGAGGCCGT 388 Query 243519 TGAAAACGAAAAGGAATTCATTTGCGA--CGCTATTCCATGCCGGCTTATTGGCATGAAC 243576 || | || ||||||||| | ||| |||| | ||| || || ||||||||| Sbjct 387 CGAGATTGAGAAGGAATTCGTGACCGAGTCGCTCCCCGTGGCC--CTCATCGGCATGAAC 330 Query 243577 TCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGT 243636 | || |||||| | ||||||||||| ||||| ||||||||| | || ||| || || Sbjct 329 GCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGC 270 Query 243637 TATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAA 243696 | || || |||||| | ||||| || | | ||||||||||| || || | Sbjct 269 TGCGACAAGCACTACAACCAGACCAACCCGTTCCCGTGGATGGAGCTCATCTCCCTCGAG 210 Query 243697 GGGAAAACTAACTTCTTCGAA 243717 || || || |||||||||||| Sbjct 209 GGCAAGACCAACTTCTTCGAA 189 >seq202680 Length=3004 Score = 131 bits (144), Expect = 4e-25 Identities = 555/861 (64%), Gaps = 33/861 (4%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||| | | | || ||||| ||||| |||||||| | ||| |||| ||| Sbjct 2667 TTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGG 2608 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGAC 242994 || |||||||||| ||||| | | ||| | ||||| || ||||| || Sbjct 2607 ACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGG---GAATCGCTCAACAAC 2551 Query 242995 GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTC-CGATGGTATTGT 243053 ||||| | || |||||||| ||| | | | || ||||| |||| ||| || || || Sbjct 2550 GACGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACGGCATCGT 2492 Query 243054 GATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 243112 | || ||||| || | || ||| | ||| || ||| || ||||| || | Sbjct 2491 GGCCGAGAATCTCGCCGGCCG-CTTCATGAAGGAGGTGCAGGTGCCCGAGGCGCGCTGCT 2433 Query 243113 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCG 243172 | || | | |||| || ||| ||||| || || || | || ||||||| Sbjct 2432 TCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTTATCG 2373 Query 243173 ACGCGCTTATTTCAGATGAACAAGAGCGA-AACGAGC---TTTTCGACGCCATCGAAAAC 243228 || | || ||| | || | ||| || || | | ||| ||||||||| | | Sbjct 2372 ACACC--TACGTCAA--GGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACC 2317 Query 243229 ATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTA------GAACCCGGT 243282 | || | || | || ||||| | ||||| ||||||| | || || Sbjct 2316 GTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTC 2257 Query 243283 AAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGG 243342 | | || || ||||||||||||| | | ||| || || || | || ||||| Sbjct 2256 GAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGC 2197 Query 243343 AGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 243402 || |||||| ||||||| ||||| ||| || | ||||| ||||||| | | Sbjct 2196 AGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGT 2137 Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCA 243462 |||||| | ||||| ||||| |||||||| ||| | |||| || | || | Sbjct 2136 AACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACC 2077 Query 243463 AAGCTCCAGAACAAGCTACCATTCGAA--ACGGTC--AAACAAATCATCACAGAAGCAGT 243518 | |||| ||||||| || |||| ||| || || || |||||| || || || Sbjct 2076 ATGCTCGTCAACAAGC--CC--TCGACCGACGTTCCCAAGCAGATCATCCTCGAGGCCGT 2021 Query 243519 TGAAAACGAAAAGGAATTCATTTGCGA--CGCTATTCCATGCCGGCTTATTGGCATGAAC 243576 || | || ||||||||| | ||| |||| | ||| || || ||||||||| Sbjct 2020 CGAGATTGAGAAGGAATTCGTGACCGAGTCGCTCCCCGTGGCC--CTCATCGGCATGAAC 1963 Query 243577 TCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGT 243636 | || |||||| | ||||||||||| ||||| ||||||||| | || ||| || || Sbjct 1962 GCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGC 1903 Query 243637 TATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAA 243696 | || || |||||| | ||||| || | | ||||||||||| || || | Sbjct 1902 TGCGACAAGCACTACAACCAGACCAACCCGTTCCCGTGGATGGAGCTCATCTCCCTCGAG 1843 Query 243697 GGGAAAACTAACTTCTTCGAA 243717 || || || |||||||||||| Sbjct 1842 GGCAAGACCAACTTCTTCGAA 1822 >seq202679 Length=2935 Score = 131 bits (144), Expect = 4e-25 Identities = 555/861 (64%), Gaps = 33/861 (4%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||| | | | || ||||| ||||| |||||||| | ||| |||| ||| Sbjct 2598 TTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGG 2539 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGAC 242994 || |||||||||| ||||| | | ||| | ||||| || ||||| || Sbjct 2538 ACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGG---GAATCGCTCAACAAC 2482 Query 242995 GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTC-CGATGGTATTGT 243053 ||||| | || |||||||| ||| | | | || ||||| |||| ||| || || || Sbjct 2481 GACGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACGGCATCGT 2423 Query 243054 GATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 243112 | || ||||| || | || ||| | ||| || ||| || ||||| || | Sbjct 2422 GGCCGAGAATCTCGCCGGCCG-CTTCATGAAGGAGGTGCAGGTGCCCGAGGCGCGCTGCT 2364 Query 243113 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCG 243172 | || | | |||| || ||| ||||| || || || | || ||||||| Sbjct 2363 TCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTTATCG 2304 Query 243173 ACGCGCTTATTTCAGATGAACAAGAGCGA-AACGAGC---TTTTCGACGCCATCGAAAAC 243228 || | || ||| | || | ||| || || | | ||| ||||||||| | | Sbjct 2303 ACACC--TACGTCAA--GGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACC 2248 Query 243229 ATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTA------GAACCCGGT 243282 | || | || | || ||||| | ||||| ||||||| | || || Sbjct 2247 GTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTC 2188 Query 243283 AAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGG 243342 | | || || ||||||||||||| | | ||| || || || | || ||||| Sbjct 2187 GAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGC 2128 Query 243343 AGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 243402 || |||||| ||||||| ||||| ||| || | ||||| ||||||| | | Sbjct 2127 AGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGT 2068 Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCA 243462 |||||| | ||||| ||||| |||||||| ||| | |||| || | || | Sbjct 2067 AACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACC 2008 Query 243463 AAGCTCCAGAACAAGCTACCATTCGAA--ACGGTC--AAACAAATCATCACAGAAGCAGT 243518 | |||| ||||||| || |||| ||| || || || |||||| || || || Sbjct 2007 ATGCTCGTCAACAAGC--CC--TCGACCGACGTTCCCAAGCAGATCATCCTCGAGGCCGT 1952 Query 243519 TGAAAACGAAAAGGAATTCATTTGCGA--CGCTATTCCATGCCGGCTTATTGGCATGAAC 243576 || | || ||||||||| | ||| |||| | ||| || || ||||||||| Sbjct 1951 CGAGATTGAGAAGGAATTCGTGACCGAGTCGCTCCCCGTGGCC--CTCATCGGCATGAAC 1894 Query 243577 TCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGT 243636 | || |||||| | ||||||||||| ||||| ||||||||| | || ||| || || Sbjct 1893 GCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGC 1834 Query 243637 TATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAA 243696 | || || |||||| | ||||| || | | ||||||||||| || || | Sbjct 1833 TGCGACAAGCACTACAACCAGACCAACCCGTTCCCGTGGATGGAGCTCATCTCCCTCGAG 1774 Query 243697 GGGAAAACTAACTTCTTCGAA 243717 || || || |||||||||||| Sbjct 1773 GGCAAGACCAACTTCTTCGAA 1753 >seq198733 Length=2163 Score = 131 bits (144), Expect = 4e-25 Identities = 555/861 (64%), Gaps = 33/861 (4%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||| | | | || ||||| ||||| |||||||| | ||| |||| ||| Sbjct 1130 TTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGG 1189 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGAC 242994 || |||||||||| ||||| | | ||| | ||||| || ||||| || Sbjct 1190 ACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGG---GAATCGCTCAACAAC 1246 Query 242995 GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTC-CGATGGTATTGT 243053 ||||| | || |||||||| ||| | | | || ||||| |||| ||| || || || Sbjct 1247 GACGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACGGCATCGT 1305 Query 243054 GATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 243112 | || ||||| || | || ||| | ||| || ||| || ||||| || | Sbjct 1306 GGCCGAGAATCTCGCCGGCCG-CTTCATGAAGGAGGTGCAGGTGCCCGAGGCGCGCTGCT 1364 Query 243113 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCG 243172 | || | | |||| || ||| ||||| || || || | || ||||||| Sbjct 1365 TCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTTATCG 1424 Query 243173 ACGCGCTTATTTCAGATGAACAAGAGCGA-AACGAGC---TTTTCGACGCCATCGAAAAC 243228 || | || ||| | || | ||| || || | | ||| ||||||||| | | Sbjct 1425 ACACC--TACGTCAA--GGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACC 1480 Query 243229 ATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTA------GAACCCGGT 243282 | || | || | || ||||| | ||||| ||||||| | || || Sbjct 1481 GTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTC 1540 Query 243283 AAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGG 243342 | | || || ||||||||||||| | | ||| || || || | || ||||| Sbjct 1541 GAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGC 1600 Query 243343 AGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 243402 || |||||| ||||||| ||||| ||| || | ||||| ||||||| | | Sbjct 1601 AGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGT 1660 Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCA 243462 |||||| | ||||| ||||| |||||||| ||| | |||| || | || | Sbjct 1661 AACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACC 1720 Query 243463 AAGCTCCAGAACAAGCTACCATTCGAA--ACGGTC--AAACAAATCATCACAGAAGCAGT 243518 | |||| ||||||| || |||| ||| || || || |||||| || || || Sbjct 1721 ATGCTCGTCAACAAGC--CC--TCGACCGACGTTCCCAAGCAGATCATCCTCGAGGCCGT 1776 Query 243519 TGAAAACGAAAAGGAATTCATTTGCGA--CGCTATTCCATGCCGGCTTATTGGCATGAAC 243576 || | || ||||||||| | ||| |||| | ||| || || ||||||||| Sbjct 1777 CGAGATTGAGAAGGAATTCGTGACCGAGTCGCTCCCCGTGGCC--CTCATCGGCATGAAC 1834 Query 243577 TCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGT 243636 | || |||||| | ||||||||||| ||||| ||||||||| | || ||| || || Sbjct 1835 GCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGC 1894 Query 243637 TATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAA 243696 | || || |||||| | ||||| || | | ||||||||||| || || | Sbjct 1895 TGCGACAAGCACTACAACCAGACCAACCCGTTCCCGTGGATGGAGCTCATCTCCCTCGAG 1954 Query 243697 GGGAAAACTAACTTCTTCGAA 243717 || || || |||||||||||| Sbjct 1955 GGCAAGACCAACTTCTTCGAA 1975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1099712798500950