Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq217546 389 4e-103 seq217792 98.7 1e-15 >seq217546 Length=10770 Score = 389 bits (430), Expect = 4e-103 Identities = 931/1394 (67%), Gaps = 48/1394 (3%) Strand=Plus/Minus Query 94156 GGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTG 94215 || ||||| | | | |||||| ||||||| |||| ||||||||||||||||||||| | Sbjct 8659 GGAGGTGGTAAGCGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATC 8600 Query 94216 CAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGA---GGGCCAGAGAC 94272 | ||| |||||||| |||||||||||||| || ||||| | ||| | || Sbjct 8599 TTTGACTTCCTCGACCTGAAGAAGAACCACGGCAAGGA---GGAGAACCGCGCCCGCGAT 8543 Query 94273 CTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCC 94332 |||||||||| || ||| | || ||||| || ||||| ||||| |||| | || | Sbjct 8542 CTCTTCTACGGCCTGTGGATTCCCGACCTGTTCATGAAGCGCGTGGAGACGGGCGGCGAC 8483 Query 94333 TGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTT 94392 ||| || ||||| ||||| || ||||| |||| |||| || || | || Sbjct 8482 TGGTCGCTCTTTTGCCCCAACGAGGCCCCCGGCCTGTTCGACTCGTGGGGCAAGGAGTTC 8423 Query 94393 GAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGC---CAGGAAGGTTATGGATGCT 94449 || || ||| | || ||||| | ||||| || | | ||| | || | Sbjct 8422 GAGGAGAAGTACGAGCGCTACGAGCAGGAGGGCCGCGCGCGCCGCGTGGTCAAGGC--CC 8365 Query 94450 AGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTG 94509 |||| ||||||| ||| | || ||| | ||||| || ||||||||||| || Sbjct 8364 AGGA-GCTGTGGTTCGCCATCCTCGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTG 8306 Query 94510 TTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCG 94569 | ||||||| | ||||| |||||||||||||||||||||||| ||| || ||| Sbjct 8305 TACAAGGACGCCTGCAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCG 8246 Query 94570 AATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTG 94629 || |||||||| ||| | ||| |||| || || || |||||| | || ||||| |||||| Sbjct 8245 AACCTGTGCACGGAGGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTG 8186 Query 94630 GGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTCTACTGCTTCGTTCGAT 94689 | ||| || ||| ||| ||| | ||| | || || ||| || Sbjct 8185 GCCTCGCTCGCGCTGCCCAAGTTCAT------------CAC--CAACGGCGA-GTTTGAC 8141 Query 94690 CTGGAGGAGCTTGTGAACTTCG-CGGGAAGGATGGTCTT---GAACCTGAACAGGGTAAT 94745 | || |||| | || || || ||||| ||||| |||||| |||| ||| || Sbjct 8140 CACCAGAAGCT---GCACGACGTCGTGAAGG-TGGTCACCAAGAACCTCAACAAGGTGAT 8085 Query 94746 CGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCAT 94805 ||||| |||| ||||||||| || ||||| ||||| ||| || || ||||||| Sbjct 8084 CGACATCAACTACTACCCCGTGCCCGAGGCCCGCAACTCGAACATGCGCCACAGGCCCAT 8025 Query 94806 CGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGACTC 94865 ||||||||| || ||||| | || |||| | |||| ||||| | || | || Sbjct 8024 CGGCATCGGAGTGCAGGGCCTGGCCGACGTCTTCATGATCATGCGCCACCCGTGGGAGAG 7965 Query 94866 TGTCGACGCG-GCGGGTTTGAATTTGAACATATTCGAAAGCATTTATTACGGGGCCATGA 94924 | ||| || ||| | | | | ||| ||||| | ||| || |||| ||| || Sbjct 7964 CGACGAGGCCCGCGAGCTCAACCGCGC-CATCTTCGAGACCATCTACTACGCCGCCCTGG 7906 Query 94925 AACAATCCGTCCACTTGGC-CAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGATCG 94983 || | | | || ||| ||| | ||| | || || | | | || ||| Sbjct 7905 TCGCCTCGAACGAGCTCGCGCAGGTCG-AGGGCAC-CTACCAGA--CCTACGAGGGCTCG 7850 Query 94984 CCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTAC 95043 ||| | |||||| | ||| |||||||||||| || ||| |||| || Sbjct 7849 CCCGCGTCCAAGGGCAAGCTCCAGCCCGACCTCTGGGGCGTCGTGCCGTCGGACAGGTGG 7790 Query 95044 GACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTG 95103 ||||||| | || ||||| | | | | |||||| || ||| |||| || ||| Sbjct 7789 GACTGGGCCACGCTCCGCGCCAACATCGCCCAGCACGGTCTGCGCAACTCGCTCCTCGTG 7730 Query 95104 GCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCC 95163 || ||||||||||||||||| || |||||||||| ||||||||||||| || || ||| Sbjct 7729 GCGCCCATGCCCACGGCCTCGACCTCGCAGATCCTGGGCAACAACGAGTGCTTTGAGCCC 7670 Query 95164 TTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAG 95223 | ||| ||||| | |||| | | || | |||||||| || ||| ||||| ||||| || Sbjct 7669 TACACGACCAACATCTACACCCGCCGCATCCTCGCCGGCGACTTCACCGTCGTCAACGAG 7610 Query 95224 CACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTG 95283 ||||| || || || || | | || | ||| | | |||||||| | || Sbjct 7609 CACCTTCTGCGCGAGCTCCAGCAGCGCGGCCTCTGGTCGCCCGCGCTCAAGAACAAGCT- 7551 Query 95284 CTACGCGC-CAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCT 95342 | | ||| ||||||||| |||||| |||| | | || || || ||||||||| ||| Sbjct 7550 CGTCTCGCACAACGGCTCGGTCCAGCGCATCGAGGAGATCCCCGACGACATCAAGAAGCT 7491 Query 95343 CTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCCGCGG 95402 |||||||||||||||||| ||||||||||||| || ||||| || |||| ||| Sbjct 7490 GTACAAGACCGTGTGGGAGCTCCCGCAGCGCGTCATCATCGACATGGCCGCCGATCGCTC 7431 Query 95403 GCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNNNNNATGGCCGAGCCCAGTCG--CGGA 95460 | ||| |||| |||||| |||| ||||||| ||| | Sbjct 7430 GGCCTACATCGACCAGAGCCAGTCGCTCAACGTCTACATGGGCGAGCCC--TCGTTTGCC 7373 Query 95461 AAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAGGGTCTCAAGACCGGTATGTATTAT 95520 || | || || ||| ||||||| ||| | ||||| ||||||||||| ||||| || Sbjct 7372 AAGCTCACCTCGATGCACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTAC 7313 Query 95521 TTGCGAACCAGGCC 95534 | || ||| |||| Sbjct 7312 CTTCGCACCCGGCC 7299 Score = 176 bits (194), Expect = 4e-39 Identities = 300/435 (69%), Gaps = 0/435 (0%) Strand=Plus/Minus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||||| |||||| || || ||| || |||||| ||| | | || |||| | | | Sbjct 9182 TACTTTGGCTTCAAGACCCTCGAGCGCTCCTACCTCTTCAGGGTCGACGGCAAGATCGTC 9123 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843 |||||||| || || |||| |||||||| |||||||| | ||| || |||| || Sbjct 9122 GAGCGACCCCAGCACATGCTCATGCGCGTGGCCATCGGTCTGCACAAGGACAACATCCCC 9063 Query 93844 AATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCGACC 93903 || | | | | | | || | | || | ||| ||||||||||| Sbjct 9062 GCCGTGATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGACG 9003 Query 93904 CTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAG 93963 || |||||||| || |||||| || ||| |||| ||||| |||||| | || | ||| Sbjct 9002 CTCTTCAACGCCGGCACCCCGCGTCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGAAG 8943 Query 93964 GCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATAC 94023 | ||||| ||| || || | ||||| ||||||| | || || |||||| || | Sbjct 8942 GAGGACTCGATCGAGGGCATCTACGACACCCTCAAGCAGTGCGCCCTCATCTCCAAGTCG 8883 Query 94024 GCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGT 94083 || || || ||||| || | ||| | | || ||| || ||||||||||| Sbjct 8882 GCCGGCGGCATCGGCCTCGCCGCGCACCGCATCCGCGCCTCCAACTCGTACATCCGCGGC 8823 Query 94084 ACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGC 94143 ||||| |||||||||||||| ||| |||| |||||||| |||| |||| || | || ||| Sbjct 8822 ACCAACGGCACCTCCAACGGTCTCATCCCCATGCTCCGCGTCTACAACGACACTGCCCGC 8763 Query 94144 TACGTGGACCAGGGT 94158 ||||| ||||| ||| Sbjct 8762 TACGTCGACCAAGGT 8748 >seq217792 Length=29351 Score = 98.7 bits (108), Expect = 1e-15 Identities = 230/345 (67%), Gaps = 4/345 (1%) Strand=Plus/Plus Query 95078 ACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCC 95137 |||| ||| ||| | ||||| |||||||||||||||||| ||||| ||||||| | Sbjct 6723 ACGGCATGAGGAACTCCCTGCTGACGGCCCCCATGCCCACGGCGTCCACCTCGCAGATAC 6782 Query 95138 TTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCG 95197 | |||||| |||| ||||||| | ||| |||| | |||| | ||||| || Sbjct 6783 TGGGCAACGTCGAGAGCATCGAACCGTACACGAGCAACATCTACACGCGACGGGTCAGCG 6842 Query 95198 CCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGT 95257 | || || || | |||||| |||||| | |||| || || ||||| ||| Sbjct 6843 CTGGCGACTTTGTCCAGATCAACCTCCACCTCGTGAGGGAGCTTCGTTCGCTGGGACTGT 6902 Query 95258 GGGGTGACAAGGTCAAGAACC--AACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCC 95315 || | | |||| ||| | | | ||||| | || || ||||||| | || Sbjct 6903 GGTTGGCTGAACTCAACTACCGCATCGTCGGCGCGCGA--GGTTCGGTCCAGACCTTCGA 6960 Query 95316 GCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGT 95375 | | || | ||| ||||| | ||||||||||||||||||||| |||| || || Sbjct 6961 CGAGCTGCCTGCCGACGTCAAGCTGAGATACAAGACCGTGTGGGAGATCTCGCAACGTGT 7020 Query 95376 GATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAG 95420 | | | ||| |||| | |||| ||||| |||| |||||| Sbjct 7021 GCTCATTGACATGGCGGAGGATCGCGCGCCCTACATCGACCAGAG 7065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493337127826520