Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq217546 192 7e-44 seq203116 107 2e-18 seq202680 107 2e-18 seq202679 107 2e-18 seq198733 107 2e-18 seq221194 100 3e-16 >seq217546 Length=10770 Score = 192 bits (212), Expect = 7e-44 Identities = 881/1373 (64%), Gaps = 52/1373 (4%) Strand=Plus/Plus Query 109407 GCGAAGATAATACATACCCGTTTTGAGACCAGCCTT---CCATGCGTACATATGCATTGA 109463 |||||| || ||||| || || ||||| || ||| ||| ||||| | ||||| || Sbjct 7307 GCGAAGGTAGTACATGCCGGTCTTGAGGCC---CTTGCGCCAGGCGTAGAAGTGCATCGA 7363 Query 109464 AGAGAGTTTGGAAAGTGTCGGACTCTCC-ATAAACAAGTTCATCGACTGAGACTGATCGA 109522 | ||| |||| || | || ||| || || | | ||| | |||||| ||| |||| Sbjct 7364 GGTGAGCTTGGCAAACGAGGG-CTCGCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGA 7422 Query 109523 TGAATCGACCA-CGATCAGCCGCCATGTCGATGAT-ACACTTTTGGCTAATTTCCCAGAC 109580 || | | | | ||||| || |||||||||||||| || | | | | | |||| || Sbjct 7423 TGTAG-GCCGAGCGATCGGCGGCCATGTCGATGATGACGCGCTGCGGGAGCT-CCCACAC 7480 Query 109581 AGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACC 109640 |||||||||| |||||||| || ||||| || ||| ||||| || | ||||| Sbjct 7481 GGTCTTGTACAGCTTCTTGATGTCGTCGGGGATCTCCTCGATGCGCTGGACCGAGCCGTT 7540 Query 109641 AGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTC 109700 | || | | ||| | | | ||||||||| ||| || | ||| ||| Sbjct 7541 GTGCGAGACGAGCTTGTTCTTGAGCGCGGGCGACCAGAGGCCGCGCTGCTGGAGCTCGCG 7600 Query 109701 AACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTT 109760 | ||| |||| |||||| ||| || || || || || |||| ||| ||||||||| Sbjct 7601 CAGAAGGTGCTCGTTGACGACGGTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTT 7660 Query 109761 AGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGG 109820 ||||||||||| || || ||||| |||||||| ||||| || | || || || ||||| Sbjct 7661 GGTCGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGG 7720 Query 109821 CATGGGAGCCATGAGAAGACTGTTTCGGAGACCCT--TCGTCTTTACCCGCTCACGCATT 109878 |||||| |||| ||| || ||| || ||||| | | | | | | | ||| Sbjct 7721 CATGGGCGCCACGAGGAGCGAGTTGCGCAGACCGTGCTGGGCGAT----GTTGGCGCGGA 7776 Query 109879 GCGT--CCCAATCATAAC-GACC-ACTAAATTTAGTCTCACCATCCCACATATCTGGTTG 109934 |||| |||| || | | | || || | | | | |||| | || || || Sbjct 7777 GCGTGGCCCAGTCCCACCTGTCCGAC--------GGCACGACGCCCCAGAGGTCGGGCTG 7828 Query 109935 AAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGC 109994 || |||| | || || || |||| | | ||| ||| | ||||| |||| || Sbjct 7829 GAGCTTGCCCTTGGACGCGGGCGAGCCCTCGTAGGTCTGGTAGGTGCCCTCGACCTGCGC 7888 Query 109995 CAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCAT 110054 | |||| || || | || || || | || || ||||| || || | || | | Sbjct 7889 GAGCTCGTTCGAGGCGACCAGGGCGGCGTAGTAGATGGTCTCGAAGAT-GGCGCGGT--T 7945 Query 110055 GAG---GCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAG 110111 ||| ||| | ||| || | || | || | | | || || || || || || Sbjct 7946 GAGCTCGCGGGCCTCGTCGCTCTCCCACGGGTGGCGCATGATCATGAAGACGTCGGCCAG 8005 Query 110112 ACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTAC 110171 ||||| || |||| || ||||| | || |||||| ||| || || || Sbjct 8006 GCCCTGCACTCCGATGCCGATGGGCCTGTGGCGCATGTTCGAGTTGCGGGCCTCGGGCAC 8065 Query 110172 GGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTC 110231 |||||| ||||| |||||| ||| ||||| ||||| || || |||| || || Sbjct 8066 GGGGTAGTAGTTGATGTCGATCACCTTGTTGAGGTTCTTGGTGACCACCTTCACGACGTC 8125 Query 110232 ATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAAT 110291 || || || | || || ||| ||| | || ||| | ||||| || || | Sbjct 8126 GTGCAGCTTCTGGTGGTCAAAC----TCG--CCGTTGGTGATGAACTTGGGCAGCGCGAG 8179 Query 110292 AGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCG--GTGTATTCCAAAATTTCCGTA 110349 || || || |||||||| | |||||| | || ||||| | | | ||||| Sbjct 8180 CGAGGCCAGGTTGCACACGGCCACCTCGTC--GGGCGACGTGTACTGGACGACCTCCGTG 8237 Query 110350 CACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCA 110409 |||| ||| || || ||| || | || || ||| || || ||| |||||| || Sbjct 8238 CACAGGTTCGACGACTGGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCAGGCG 8297 Query 110410 TCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCAT 110469 ||||| || |||||||| || || || || || |||| |||| ||| ||||| ||| Sbjct 8298 TCCTTGTACAGCATGTAGGGCGTGCCGGTCTCGATCTGCGACTCGAGGATGGCGAACCAC 8357 Query 110470 ACATCGGCGGCGGGGAC--AGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACA 110527 | || ||| ||| | ||| ||| | || |||| |||||| |||| Sbjct 8358 AGCTCCTGGGCCTTGACCACGCGGCG--CGCGCGGCCCTCCTGCTCGTAGCGCTCGTACT 8415 Query 110528 AGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGA 110587 ||||| || |||| || || || | || || |||| || ||| || |||| Sbjct 8416 TCTCCTCGAACTCCTTGCCCCACGAGTCGAACAGGCCGGGGGCCTCGTTGGGGCAAAAGA 8475 Query 110588 GGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCG 110647 | ||||| | || ||| ||| || | ||||||||||||||| |||||||||| |||| Sbjct 8476 GCGACCAGTCGCCGCCCGTCTCCACGCGCTTCATGAACAGGTCGGGAATCCACA-GGCCG 8534 Query 110648 -AGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAG 110706 |||| || || ||| || ||| || | || ||||| || || | ||| Sbjct 8535 TAGAAGAGATCGCGGGCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTCAGGTCGAGGAAG 8594 Query 110707 TCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG 110759 || | ||| |||| |||||| || ||||| |||| |||| | ||||| || Sbjct 8595 TCAAAGATGTCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCTTGCG 8647 >seq203116 Length=2194 Score = 107 bits (118), Expect = 2e-18 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || ||||| || ||| | ||| ||||||||| || || |||||||| || Sbjct 472 TGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCG 531 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| || || || || || |||||||||||||| || | Sbjct 532 CGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCG 591 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGA-------CTTGTCGAACCACTTGAG 119680 ||||| ||| |||||||| || |||||| || ||||| || |||||| | Sbjct 592 GCGAATCCGACGAGACGCTCGGC-GAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCAT 650 Query 119681 AGCCCAGTTGGCCTT 119695 ||||||| |||||| Sbjct 651 CGCCCAGTCGGCCTT 665 >seq202680 Length=3004 Score = 107 bits (118), Expect = 2e-18 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || ||||| || ||| | ||| ||||||||| || || |||||||| || Sbjct 2105 TGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCG 2164 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| || || || || || |||||||||||||| || | Sbjct 2165 CGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCG 2224 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGA-------CTTGTCGAACCACTTGAG 119680 ||||| ||| |||||||| || |||||| || ||||| || |||||| | Sbjct 2225 GCGAATCCGACGAGACGCTCGGC-GAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCAT 2283 Query 119681 AGCCCAGTTGGCCTT 119695 ||||||| |||||| Sbjct 2284 CGCCCAGTCGGCCTT 2298 >seq202679 Length=2935 Score = 107 bits (118), Expect = 2e-18 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || ||||| || ||| | ||| ||||||||| || || |||||||| || Sbjct 2036 TGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCG 2095 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| || || || || || |||||||||||||| || | Sbjct 2096 CGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCG 2155 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGA-------CTTGTCGAACCACTTGAG 119680 ||||| ||| |||||||| || |||||| || ||||| || |||||| | Sbjct 2156 GCGAATCCGACGAGACGCTCGGC-GAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCAT 2214 Query 119681 AGCCCAGTTGGCCTT 119695 ||||||| |||||| Sbjct 2215 CGCCCAGTCGGCCTT 2229 >seq198733 Length=2163 Score = 107 bits (118), Expect = 2e-18 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || ||||| || ||| | ||| ||||||||| || || |||||||| || Sbjct 1692 TGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCG 1633 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| || || || || || |||||||||||||| || | Sbjct 1632 CGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCG 1573 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGA-------CTTGTCGAACCACTTGAG 119680 ||||| ||| |||||||| || |||||| || ||||| || |||||| | Sbjct 1572 GCGAATCCGACGAGACGCTCGGC-GAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCAT 1514 Query 119681 AGCCCAGTTGGCCTT 119695 ||||||| |||||| Sbjct 1513 CGCCCAGTCGGCCTT 1499 >seq221194 Length=10325 Score = 100 bits (110), Expect = 3e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 26901 AAAGAAAGTCTGGTATGCACCCAACAAATTTGAGTCATATGGGGAGGAAGAGATTAAAGC 26960 |||||| || | || || |||||| |||||| | || |||||| ||||| || || Sbjct 6060 AAAGAAGGTGTACTACGCCCCCAACGGCTTTGAGGCCTACGGGGAGCTCGAGATCAAGGC 6001 Query 26961 CGTTGAGGCTTGCTTGCGCGATGGCTGGCTCGCTGGCTTTGGTGATCGTACTGTGGAATT 27020 ||| |||| ||||||||| ||||||||||| |||||||| | || ||| Sbjct 6000 CGTCGAGGATTGCTTGCGAAGCGGCTGGCTCGCCGGCTTTGGAAACTACACCCAACGATT 5941 Query 27021 TGAAAAGAGGGTCGCTGACCTCTTCGGTAAGAAATTTGGACTATTTGTGAACTCTGGC 27078 || ||||||||||| | |||||| || ||||| | || || ||||| ||||| ||| Sbjct 5940 CGAGAAGAGGGTCGCCGGCCTCTTTGGCAAGAAGTACGGCCTGTTTGTCAACTCGGGC 5883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587325858578600