Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq217546 132 6e-26 seq203116 93.3 5e-14 seq202680 93.3 5e-14 seq202679 93.3 5e-14 seq198733 93.3 5e-14 >seq217546 Length=10770 Score = 132 bits (146), Expect = 6e-26 Identities = 322/485 (66%), Gaps = 2/485 (0%) Strand=Plus/Plus Query 106452 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 106511 |||| || || |||| || |||| ||||| || ||| ||| || ||||||| Sbjct 8164 ACTTGGGCAGCGCGAGCGAGGCCAGGTTGCACACGGCCACCTCGTCGGGCGACGTGTACT 8223 Query 106512 CTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCT 106571 | | || || |||| ||| || || || || || | | || ||||| || Sbjct 8224 GGACGACCTCCGTGCACAGGTTCGACGACTGGATGGTGCCGAGGTGCTGCTGGTTGGACT 8283 Query 106572 TTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGA 106631 | |||||| || |||||||| |||||||||||||| || ||||| |||| |||| || Sbjct 8284 TGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCGGTCTCGATCTGCGACTCGA 8343 Query 106632 GAATTGCCTTCCACACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGT 106691 | || || ||||| || ||| || | | | || || |||||| ||||| Sbjct 8344 GGATGGCGAACCACAGCTCCTGGGCCTTGACCACGCGGCGCGCGCGGCCCTCCTGCTCGT 8403 Query 106692 ACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGT 106751 | ||| | || ||||||| ||| || |||| | || || || |||| || Sbjct 8404 AGCGCTCGTACTTCTCCTCGAACTCCTTGCCCCACGAGTCGAACAGGCCGGGGGCCTCGT 8463 Query 106752 CTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 106811 || || || || ||||| | || ||| ||| || ||||||||||| ||||| |||| Sbjct 8464 TGGGGCAAAAGAGCGACCAGTCGCCGCCCGTCTCCACGCGCTTCATGAACAGGTCGGGAA 8523 Query 106812 TCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT- 106870 |||||||| | |||||||| | || ||| || | || ||||| || | Sbjct 8524 TCCACAGGCCGTAGAAGAGATCGCGGGCGCGGTTCTCCTCCTTGCCGTGGTT-CTTCTTC 8582 Query 106871 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 106930 | || ||||| || | ||| ||||||||||| ||||| || |||| |||| || ||| Sbjct 8583 AGGTCGAGGAAGTCAAAGATGTCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCC 8642 Query 106931 TTTCG 106935 || || Sbjct 8643 TTGCG 8647 Score = 114 bits (126), Expect = 2e-20 Identities = 216/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 107063 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 107122 || || || || ||| |||| ||||| | || |||| | | || || | ||||| || Sbjct 8869 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGGGTGTCGTAGATGCCC 8928 Query 107123 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 107182 | ||| ||||||||||| ||| || |||||||| |||| |||||| | || || Sbjct 8929 TCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGACGCGGGGTG 8988 Query 107183 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 107242 || || |||||||| || || || ||||| |||| | || |||| |||||| Sbjct 8989 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAG 9048 Query 107243 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATG 107302 ||||| | || | |||| ||| ||| | ||||||||||| ||||| | |||| Sbjct 9049 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGACCGATGGCCACGCGCATGAGCATG 9108 Query 107303 TATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--TAGCTCTTCTCAAGGG 107360 | |||||| || | || |||| |||| || |||||| ||| ||| |||| Sbjct 9109 TGCTGGGGTCGCTCGACGATCTTGCCGTCGACCC--TGAAGAGGTAGGAGCGCTCGAGGG 9166 Query 107361 TTTTGAGACCAAAGTA 107376 | |||| |||||||| Sbjct 9167 TCTTGAAGCCAAAGTA 9182 >seq203116 Length=2194 Score = 93.3 bits (102), Expect = 5e-14 Identities = 277/418 (66%), Gaps = 11/418 (3%) Strand=Plus/Plus Query 117096 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 117155 |||||| || || | || |||| ||||||| | |||| || | |||||| ||||| Sbjct 282 GAGGAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGGTCGGCGTTCATGCCGAT 341 Query 117156 GAGATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCAC 117215 ||| ||||| | || | ||| | ||||||||||| || ||||| | Sbjct 342 GAGGGCCACGGGGAGCGACTCGGTCACGAATTCCTTCTCAATCTCGACGGCCTCGAGGAT 401 Query 117216 GATG-GCGTGGATAGTTTCGGTAGTGGGTCTATT-ACG--CAAAGTCTTGAAGAGCTCCA 117271 ||| || ||| | | |||| | ||| | || ||| || || | || ||| || Sbjct 402 GATCTGCTTGGGAACGT-CGGTCGAGGGCTTGTTGACGAGCATGGTGTAGAGGAGG--CA 458 Query 117272 CGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGC 117331 ||| || || |||||| |||||||| ||| || | || || |||| |||| Sbjct 459 -GGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGC 517 Query 117332 CTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGA 117391 | |||||||| || |||||||| | ||| | || | |||||| ||||||||||||| Sbjct 518 CGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGA 577 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG-AGCGA--GACTTTGTGT 117448 | ||||| || || || | | || ||||||||||||| ||| || ||| Sbjct 578 TGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTGT 637 Query 117449 CAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 | ||| ||||| ||||| | |||||||||| | | | || || || | |||||| Sbjct 638 TGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 695 >seq202680 Length=3004 Score = 93.3 bits (102), Expect = 5e-14 Identities = 277/418 (66%), Gaps = 11/418 (3%) Strand=Plus/Plus Query 117096 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 117155 |||||| || || | || |||| ||||||| | |||| || | |||||| ||||| Sbjct 1915 GAGGAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGGTCGGCGTTCATGCCGAT 1974 Query 117156 GAGATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCAC 117215 ||| ||||| | || | ||| | ||||||||||| || ||||| | Sbjct 1975 GAGGGCCACGGGGAGCGACTCGGTCACGAATTCCTTCTCAATCTCGACGGCCTCGAGGAT 2034 Query 117216 GATG-GCGTGGATAGTTTCGGTAGTGGGTCTATT-ACG--CAAAGTCTTGAAGAGCTCCA 117271 ||| || ||| | | |||| | ||| | || ||| || || | || ||| || Sbjct 2035 GATCTGCTTGGGAACGT-CGGTCGAGGGCTTGTTGACGAGCATGGTGTAGAGGAGG--CA 2091 Query 117272 CGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGC 117331 ||| || || |||||| |||||||| ||| || | || || |||| |||| Sbjct 2092 -GGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGC 2150 Query 117332 CTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGA 117391 | |||||||| || |||||||| | ||| | || | |||||| ||||||||||||| Sbjct 2151 CGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGA 2210 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG-AGCGA--GACTTTGTGT 117448 | ||||| || || || | | || ||||||||||||| ||| || ||| Sbjct 2211 TGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTGT 2270 Query 117449 CAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 | ||| ||||| ||||| | |||||||||| | | | || || || | |||||| Sbjct 2271 TGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 2328 >seq202679 Length=2935 Score = 93.3 bits (102), Expect = 5e-14 Identities = 277/418 (66%), Gaps = 11/418 (3%) Strand=Plus/Plus Query 117096 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 117155 |||||| || || | || |||| ||||||| | |||| || | |||||| ||||| Sbjct 1846 GAGGAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGGTCGGCGTTCATGCCGAT 1905 Query 117156 GAGATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCAC 117215 ||| ||||| | || | ||| | ||||||||||| || ||||| | Sbjct 1906 GAGGGCCACGGGGAGCGACTCGGTCACGAATTCCTTCTCAATCTCGACGGCCTCGAGGAT 1965 Query 117216 GATG-GCGTGGATAGTTTCGGTAGTGGGTCTATT-ACG--CAAAGTCTTGAAGAGCTCCA 117271 ||| || ||| | | |||| | ||| | || ||| || || | || ||| || Sbjct 1966 GATCTGCTTGGGAACGT-CGGTCGAGGGCTTGTTGACGAGCATGGTGTAGAGGAGG--CA 2022 Query 117272 CGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGC 117331 ||| || || |||||| |||||||| ||| || | || || |||| |||| Sbjct 2023 -GGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGC 2081 Query 117332 CTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGA 117391 | |||||||| || |||||||| | ||| | || | |||||| ||||||||||||| Sbjct 2082 CGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGA 2141 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG-AGCGA--GACTTTGTGT 117448 | ||||| || || || | | || ||||||||||||| ||| || ||| Sbjct 2142 TGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTGT 2201 Query 117449 CAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 | ||| ||||| ||||| | |||||||||| | | | || || || | |||||| Sbjct 2202 TGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 2259 >seq198733 Length=2163 Score = 93.3 bits (102), Expect = 5e-14 Identities = 277/418 (66%), Gaps = 11/418 (3%) Strand=Plus/Minus Query 117096 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 117155 |||||| || || | || |||| ||||||| | |||| || | |||||| ||||| Sbjct 1882 GAGGAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGGTCGGCGTTCATGCCGAT 1823 Query 117156 GAGATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCAC 117215 ||| ||||| | || | ||| | ||||||||||| || ||||| | Sbjct 1822 GAGGGCCACGGGGAGCGACTCGGTCACGAATTCCTTCTCAATCTCGACGGCCTCGAGGAT 1763 Query 117216 GATG-GCGTGGATAGTTTCGGTAGTGGGTCTATT-ACG--CAAAGTCTTGAAGAGCTCCA 117271 ||| || ||| | | |||| | ||| | || ||| || || | || ||| || Sbjct 1762 GATCTGCTTGGGAACGT-CGGTCGAGGGCTTGTTGACGAGCATGGTGTAGAGGAGG--CA 1706 Query 117272 CGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGC 117331 ||| || || |||||| |||||||| ||| || | || || |||| |||| Sbjct 1705 -GGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGC 1647 Query 117332 CTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGA 117391 | |||||||| || |||||||| | ||| | || | |||||| ||||||||||||| Sbjct 1646 CGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGA 1587 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG-AGCGA--GACTTTGTGT 117448 | ||||| || || || | | || ||||||||||||| ||| || ||| Sbjct 1586 TGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTGT 1527 Query 117449 CAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 | ||| ||||| ||||| | |||||||||| | | | || || || | |||||| Sbjct 1526 TGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 1469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588327843417880